Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1971 ATGCAGCACCACCACCCTCTCACTCTCACACTCACCACTCTCTTCATCTTCCTCCTTTTCACTTTCTCCTCCTCCCACGAAGATCTAATCCATTCCTCCTGCCTCCATGCCAGGTACCCGACCCTCTGCCTCCGAACCCTCTCCAACTACTCCGGCCCCGCCGACACCCCCTTGGACGTCGCCCGTGCCGCCCTCAGGGTCAGCCTAGCCCACGCCCGCAGAGCCTCCCACTACCTGCATACCTCCAATGGCGGCGCGAGCAGTACCAGCAGCAGCAAGCGGCAGCGAGCGGCGCTGAGTGACTGCGCGGAGCTGGTAGCGGACTCGGTGGAGGAGCTGCGGAAGAGCTTGGAGGAGCTGCAGCACCTGCGGCCGGAGACGTTCAGGTGGCAGATGAGCAATGCTATGACGTGGGTCAGCGCCGCCCTCACCGACGGCGACACGTGCCTCGACGGCGGCAGTGTCAGGCTTGATGTGAAGCGCAGGGTCACCGACTTGGCAATGGTTACCAGCAATGCTCTTTACATGATCAATCGTTTGGGCCAAGGTGGGCCTGGAAAGCCCGTGCCTCATTCTAGGCCGGGCTTGAGTGTTAAGAATTGA 603 0.6169 MQHHHPLTLTLTTLFIFLLFTFSSSHEDLIHSSCLHARYPTLCLRTLSNYSGPADTPLDVARAALRVSLAHARRASHYLHTSNGGASSTSSSKRQRAALSDCAELVADSVEELRKSLEELQHLRPETFRWQMSNAMTWVSAALTDGDTCLDGGSVRLDVKRRVTDLAMVTSNALYMINRLGQGGPGKPVPHSRPGLSVKN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1971 200 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 180 IPR035513 -
Lja6g1971 200 CDD PMEI-like_3 32 180 - -
Lja6g1971 200 PANTHER PECTINESTERASE INHIBITOR 3 18 182 - -
Lja6g1971 200 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 181 IPR035513 -
Lja6g1971 200 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 180 IPR006501 GO:0004857
Lja6g1971 200 MobiDBLite consensus disorder prediction 180 200 - -
Lja6g1971 200 PANTHER PECTINESTERASE INHIBITOR-LIKE 18 182 - -
Lja6g1971 200 SMART PMEI_2 25 176 IPR006501 GO:0004857
Lja6g1971 200 Coils Coil 103 123 - -
Lja6g1971 200 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1971 Lja-Chr6 47661826 47662692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1971 30 193 Carbohydrate Esterase AT5G53370 30.058 7.54e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1971 - - gmx:100816686 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1971 6 47661826 47662692 Lja6g1971 6 47661826 47662692 ECH