Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1967 ATGGATCAAGGTGGAAGCTCCAAAGTAACAGGAATCAGGCAAATTGTGAGATTGAAGGAAATACTTCAAAAGTGGCAAACTGTGACCTTAGGCTCAAAACCTTCCCTTCCTAACAAATCTGATGCAACTGATCATCATGGGAGTAGATCACCAATAATTAACAGAAGGATAAAAGACATTGTGAGTTGTGACTCTGATGAGGATAGCTGCCAAAGTCCAGAGCCGCCGTGCGATGTTCCGAAAGGCTATTTGGCAGTGTATGTTGGACCGGAGCTTCGGAGGTTCATCATTCCCACCAGCTATCTTACACACTCTCTCTTCAAAGTGTTACTGGAAAAAGCTGCTGATGAATTCGGGTTTGACCAGAGTGGTGGGCTCACTATCCCTTGTGAGATTGAGACCTTCAAATTCCTCCTCAAATGCATGGAGAACCAGCAGAATGGGCACCATGAAGATGACAACTCCTCTGGACACAGGAACTTTGGAAGAGTAAGTAGTTGCTAG 504 0.4504 MDQGGSSKVTGIRQIVRLKEILQKWQTVTLGSKPSLPNKSDATDHHGSRSPIINRRIKDIVSCDSDEDSCQSPEPPCDVPKGYLAVYVGPELRRFIIPTSYLTHSLFKVLLEKAADEFGFDQSGGLTIPCEIETFKFLLKCMENQQNGHHEDDNSSGHRNFGRVSSC* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1967 167 Coils Coil 164 167 - -
Lja6g1967 167 Pfam Auxin responsive protein 65 141 IPR003676 GO:0009733
Lja6g1967 167 PANTHER BNAA02G05090D PROTEIN 7 158 - -
Lja6g1967 167 MobiDBLite consensus disorder prediction 148 167 - -
Lja6g1967 167 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 158 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1967 Lja-Chr6 47562665 47565547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1967 1 155 Calmodulin-binding Proteins AT5G20810 69.677 1.96e-77 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1967 K14488 - cpap:110808074 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1967 6 47562665 47565547 Lja6g1967 6 47562665 47565547 ECH
Lja4g1477 4 13626624 13629162 Lja6g1967 6 47562665 47565547 PCT