Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1961 ATGGAAAATTGGACGACCCCAGATTGCAAGCCGGAGATAGCATCGTTGGCACCGCGGTTGCAGTTCTTCATTCGCATGATTCCAAACGGCAACAACATAGTGATGCAGGGTTCAACTGAAGAGAGTGTGAAATCAGTCCACAAAAGGATCGAGAGTAGAACTGGAATTCCAATTCAGAACCAGAGATTGATTCATGCAGGGAAGCAGCTCCGTTGGGAGCAGAGTCTCGGTGATTGCGACATCCAAAACGATACCACCCTTCAACTGGTGGCCCACCTTCGTAGCGGAGAAACCGGCTATCTGCAGAATGTGGCGGCGAATGTGGCGGTGGACAACATGTTTTGGCTAATTTGGGACCTCTCCTATGGGAAAACAGGGAGCAGTACTAGCAGTGGTCTTTCCGACATCCTGGAGCATCGCACAAAAATGTTGTTCAAGCTTAACGCATTGGACAATTTCATGAATACAACGGCTCCTGGGGAGCTGGTAACGCTCTACCGGTCCAAATCATCATCACCTGGTAACAAAGCCATGGCAGAATTCACCATGAGATGTTTCTTGGACTGTTGCAGCTCCATGTTCAAGAAAGGGTTGCATGTTTTTTGCCTTCCCGTAGTGGTGGGGTTTTGTAATCTGCTTAGAATAGACGCGGGGAATGATGGCGATCTTTACAATTCTTTTATGAATACTCTCAGGATTGTGATGGAGGAGTGTGTCAATGATATAAATCCTAATCAGAAGGTTCTGCTTAAGGGTGTTTTCAATCATGTTCGTGAGAGTGCGAATTTGGTGTTTAGGGATTTGGATATTTGTATGATGATCCCTGAGCTATCGTTGATGAGCAATTTTCAGAATCTCATTGCACTCTTAGTCCCTTTTAGCAATGCAATCAAGGTTAAGGGGTTGCAACCTTGGGAGACTCGGTCTGAGACTATTGAGGAAGATGAGGAGGATCCATCGCTTGCAAATGAGATTTACCACCTTCATCTTATGTACACTAAATTAGTATACAAAATGGAAGTAGCTTTTCAGGACATTGAGGATTACTTGGATAACAAGAAGCAGTGGCATGTGTCGTGGGTTCATTACCTTACCATATTGAAGCGTATGTCTAAACTCTCTAAGCTAATAGACGGCGCTGAAGAGATGCTTAGGGGATTTTTGATACACAGACAGATATACTTGTCTATTCTAATACGTGAGGATCATGAGTGGATTCTGGAGTACAAAAGTATGCTAGACTTCATAGCTAGAAGGCAATTGGCAGTGAAGTTATTTCCTAGTGAAGAGAATGAAGATCAGGAAATGCATGCCATATTTATTGACAGGTCTGATCTACTAGCTGAATCTTTCCGTGACATAGTGTATGAAAGACCTGAAGCTCTGCGACATGGCCTCTCTGTAAATTTTTTGCATGAGGAAGGGACAGGGGACGGTGTGAAGAGGGAGTGGTTTCTTTTAGTGTGTCAAGAAATATTTAATCCGTTAAATGCTCTTTTCATGGCATGCCCAGATGACCGCAGAAGATTTTTTCCTAATCCTGGTGAGTTCCATCCCCAAATCTGA 1566 0.4393 MENWTTPDCKPEIASLAPRLQFFIRMIPNGNNIVMQGSTEESVKSVHKRIESRTGIPIQNQRLIHAGKQLRWEQSLGDCDIQNDTTLQLVAHLRSGETGYLQNVAANVAVDNMFWLIWDLSYGKTGSSTSSGLSDILEHRTKMLFKLNALDNFMNTTAPGELVTLYRSKSSSPGNKAMAEFTMRCFLDCCSSMFKKGLHVFCLPVVVGFCNLLRIDAGNDGDLYNSFMNTLRIVMEECVNDINPNQKVLLKGVFNHVRESANLVFRDLDICMMIPELSLMSNFQNLIALLVPFSNAIKVKGLQPWETRSETIEEDEEDPSLANEIYHLHLMYTKLVYKMEVAFQDIEDYLDNKKQWHVSWVHYLTILKRMSKLSKLIDGAEEMLRGFLIHRQIYLSILIREDHEWILEYKSMLDFIARRQLAVKLFPSEENEDQEMHAIFIDRSDLLAESFRDIVYERPEALRHGLSVNFLHEEGTGDGVKREWFLLVCQEIFNPLNALFMACPDDRRRFFPNPGEFHPQI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1961 521 ProSiteProfiles Ubiquitin domain profile. 20 96 IPR000626 GO:0005515
Lja6g1961 521 Gene3D - 17 110 - -
Lja6g1961 521 ProSiteProfiles HECT domain profile. 458 521 IPR000569 GO:0004842
Lja6g1961 521 SUPERFAMILY Ubiquitin-like 21 107 IPR029071 -
Lja6g1961 521 Pfam Ubiquitin family 23 94 IPR000626 GO:0005515
Lja6g1961 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 16 516 - -
Lja6g1961 521 PRINTS Ubiquitin signature 31 51 IPR019956 -
Lja6g1961 521 PRINTS Ubiquitin signature 52 72 IPR019956 -
Lja6g1961 521 PRINTS Ubiquitin signature 73 94 IPR019956 -
Lja6g1961 521 SUPERFAMILY Hect, E3 ligase catalytic domain 435 514 IPR035983 GO:0004842
Lja6g1961 521 Gene3D Hect, E3 ligase catalytic domains 400 520 - -
Lja6g1961 521 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 16 516 - -
Lja6g1961 521 SMART ubq_7 20 92 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1961 Lja-Chr6 47492707 47494272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1961 20 96 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.662 7.70e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1961 - - lja:Lj6g3v1160790.1 983.015