Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1957 ATGGAATATGAAGCACCCACCTTCTCCCTTTTCACTGAACCACCACCACCTTCATCATCATCATCAATCACCAATCCCCAATTCCCAAATCTCCAAAACCCTAATCCCAATCCCATGACTCTGAATCCCCAAACCAGAACCACAAGAAGAAGAAGAACCGTTCTTCCCCCTTCCATCGAAATCATCGACGTCGATTCCATCTCCTTCACCCGCCGCACGCCGCCCACCACCACCGTCATCGATCTCTCCGACACCGAAGACGACGACGACGACGACGTCAGAATCCTCAATTTCATCCCCGCAAACACCCCTTTCGGCAAACGAATCAAAAAACGCCACACCGAGAAAGCCGAATCATCAAATGACGCGCCGTTCACCTGCGAAATCTGCACGGACACCAAGACGGTGAGGGACTCGTTCGCCATCAGCGGCTGTTCCCACGCGTACTGCTCCGATTGCGTCGCCACCTACGTGCGGTCCAAGCTTGAGGAGAACGTGATCAACATCCGGTGTCCTGTTTCTGGATGTTCAGGTTTGCTTGAGGCGGAGGATTGTCGCGCGATTCTCTCGCCGGAGGTTTTTGATCGGTGGGGGACGGCGACGTGCGAGGCGTTGTTTGCGGTGTCTGAGAAATTCTACTGCCCGTTCAAGGATTGCTCTACGCTGTTGATTGATGATGGGGCGGAGAAGGTTATGGAATCGGAGTGTCCTAATTGTAGGAGGATGTTCTGTGCGCAGTGTAAGGTGCCGTGGCATGATGGGGTTACGTGCGAGGAGTTTCAGAAGCTGGGGAAGGATGAGAGGGAGAAGGAAGATATGATGTTGATGAAGCTTGCTAAGGATCAGAAGTGGAAGAGGTGCCCCCATTGCAAATTCTATGTTGCAAAATCTGAAGGATGCATGTACATGAAATGCAGGTGTGGACATGCCTTCTGTTACAACTGTGGAGCTCCTAACAAGAATCCCAGCCATCACTGCAACAAGTGTCATCGCTAG 996 0.5201 MEYEAPTFSLFTEPPPPSSSSSITNPQFPNLQNPNPNPMTLNPQTRTTRRRRTVLPPSIEIIDVDSISFTRRTPPTTTVIDLSDTEDDDDDDVRILNFIPANTPFGKRIKKRHTEKAESSNDAPFTCEICTDTKTVRDSFAISGCSHAYCSDCVATYVRSKLEENVINIRCPVSGCSGLLEAEDCRAILSPEVFDRWGTATCEALFAVSEKFYCPFKDCSTLLIDDGAEKVMESECPNCRRMFCAQCKVPWHDGVTCEEFQKLGKDEREKEDMMLMKLAKDQKWKRCPHCKFYVAKSEGCMYMKCRCGHAFCYNCGAPNKNPSHHCNKCHR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1957 331 SMART ring_2 127 174 IPR001841 -
Lja6g1957 331 SMART ring_2 287 329 IPR001841 -
Lja6g1957 331 Gene3D - 253 331 - -
Lja6g1957 331 Pfam IBR domain, a half RING-finger domain 211 257 IPR002867 -
Lja6g1957 331 Pfam IBR domain, a half RING-finger domain 274 326 IPR002867 -
Lja6g1957 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 208 IPR013083 -
Lja6g1957 331 SUPERFAMILY RING/U-box 268 329 - -
Lja6g1957 331 SUPERFAMILY RING/U-box 122 204 - -
Lja6g1957 331 MobiDBLite consensus disorder prediction 1 50 - -
Lja6g1957 331 SMART ibrneu5 195 257 IPR002867 -
Lja6g1957 331 SMART ibrneu5 267 329 IPR002867 -
Lja6g1957 331 Pfam Zinc finger, C3HC4 type (RING finger) 127 172 IPR018957 GO:0046872
Lja6g1957 331 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 73 330 - -
Lja6g1957 331 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 73 330 IPR031127 GO:0004842|GO:0016567
Lja6g1957 331 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Lja6g1957 331 ProSiteProfiles TRIAD supradomain profile. 123 331 IPR044066 -
Lja6g1957 331 ProSiteProfiles Zinc finger RING-type profile. 127 173 IPR001841 -
Lja6g1957 331 MobiDBLite consensus disorder prediction 14 50 - -
Lja6g1957 331 SUPERFAMILY RING/U-box 203 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1957 Lja-Chr6 47449639 47452104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1957 126 318 C3H Transcription Factor Family AT2G19610 32.020 8.41e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1957 K11975 - gmx:100807821 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1957 6 47449639 47452104 Lja6g1957 6 47449639 47452104 ECH