Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1956 ATGGGTATCAACCTATCATCATGCATTGATTGCTTTCTTCCTAGTAACAAGACAGGGATACCTCTCACTCTCCGAACAAGCAAAAGGGTCGTTGTTCCCTCTTCCACCGACGACGGCGACGGCAACGGCGACGTTAAGGTCCTCAGCAGTTTTGAAAGAGGAGAGGGTTCAAACAACGCGCCGCCGTTCATCTGCGAAATCTGCACGGAGACCAAGACAGCATGGGAGTCTTTCGGCATCACCGGGTGCTCCCACGCGTACTGCTCCGACTGTGTAGCAATGTACGTGCGGTCCAAGCTTGAGGAGAACGTGGTTAACATTCAGTGTCCTGTTCCAGGATGTTCAGGTCAGTTGGAGGCGGAGGATTGCCGTGTTATTCTCCCGGTAGAGGTGTTTGACCGGTGGGGGAAGGCGGCGAGCGAGGCGGTGTTCGCGGAGTCGGAGAAGTTCTACTGCCCCTTCGCTAACTGCTCTGCTTTGCTGATCAACGACGGGACGGTGGTGATTATGGAATCGGAGTGCCCTGTTTGCCGGAGGAGGTTCTGCGCGCAGTGCAAAGTGCCATGGCACGTGGGGGTCACGTGCGATGAGTATCAGAGACTGAGTAAAGATGAGAGGAGAAGGGAAGAGATGCTGATAAGGCTTGCTATGGATCACAAGTGGAGGAGGTGCCCCAATTGTAAAATATATGTTGAGAGAAGAAGTGGCTGCGACACCATTAAATGCAGGTCAGGCTTTCATTTCTTGTTGCATTGTTGA 759 0.5296 MGINLSSCIDCFLPSNKTGIPLTLRTSKRVVVPSSTDDGDGNGDVKVLSSFERGEGSNNAPPFICEICTETKTAWESFGITGCSHAYCSDCVAMYVRSKLEENVVNIQCPVPGCSGQLEAEDCRVILPVEVFDRWGKAASEAVFAESEKFYCPFANCSALLINDGTVVIMESECPVCRRRFCAQCKVPWHVGVTCDEYQRLSKDERRREEMLIRLAMDHKWRRCPNCKIYVERRSGCDTIKCRSGFHFLLHC* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1956 252 Pfam Zinc finger, C3HC4 type (RING finger) 65 110 IPR018957 GO:0046872
Lja6g1956 252 SMART ibrneu5 133 195 IPR002867 -
Lja6g1956 252 Gene3D - 192 252 - -
Lja6g1956 252 ProSiteProfiles Zinc finger RING-type profile. 65 111 IPR001841 -
Lja6g1956 252 SUPERFAMILY RING/U-box 143 200 - -
Lja6g1956 252 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Lja6g1956 252 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 244 IPR031127 GO:0004842|GO:0016567
Lja6g1956 252 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 47 244 - -
Lja6g1956 252 Pfam IBR domain, a half RING-finger domain 145 195 IPR002867 -
Lja6g1956 252 SUPERFAMILY RING/U-box 207 243 - -
Lja6g1956 252 ProSiteProfiles TRIAD supradomain profile. 61 252 IPR044066 -
Lja6g1956 252 SUPERFAMILY RING/U-box 61 142 - -
Lja6g1956 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1956 Lja-Chr6 47444916 47445674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1956 65 247 C3H Transcription Factor Family AT2G19610 25.000 3.05e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1956 K11975 - rcu:8259039 273.092