Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1955 ATGGGTCTCACCTATTCTTGTTTCCACCCTCTCACTCGCCGCCGTACAAGAAAAAGGGTCGCTGCTCACTCTTCCGCCGTCAAGGTCACCCCCGCCGCCGGCACCAACACCTTCCCACCTACCTCTGCCGGTAACGGCCTCCATACCGTCACTGACCACTCCAAAACTAACTACGACGGCGAAAACAACGACGTTAAGGTCCTCAATTCCGAAAAAGACGTCATCGGAGAGAGTTCAAACGACGCGCCGCCGTTCATCTGCGAAATCTGCACGGAAACCAAAACCGCGTGGGAGTCTTTCACCGCCACCACCACCACATGCTCCCACCACGCGTTTTGCTCCGAGTGCGTTTTCACCTACGTGAGCTCCAAGCTTCAACAGAATCAGATCAACATCACTTGCCCCATTCCGGAATGTACGGGGTTGTTGGAGGCGGAGGATTGCCGCGCGATTCTCCCGCCGGAGGTGGTTGACCGGTGGCTGACGGCGTTGTGCGAGGCGATTATCACCGCGTCGGAGAAATTCTACTGTCCGTTTGTGGATTGCTCTGCTATGTTGATCGATGATGGGGTGGAGAAGGTTACGGAATCGGAGTGTCCTAATTGCCGGAGGTTGTTCTGCGCGCAGTGTAAGGTGCCGTGGCACAACGAGGTCACGTGTGAGGAGTTTCAGAAGATGAATCAGGAGGAGAAGGGGTTGGTGGTGAAGCTTGCGAAGGAGATGAAGAAGTGCCCCAATTGCAGATTCTACATTGCTAAATCTGATGACTGTGAAGTGATTCGATGCAGGTGTGGATATGCAGAGTGCAGTGACACCGCCGGAGAAGGAGAGTCGTCAAACGCGGCGCCATTTATCTGCGAAATCTGCACGGAGACTAAAACGGCGTGGGAGTCCTTTGGAATCACCGGGTGCTCGCATGCCTATTGCTCTGACTGCGTGGCAATGTACGTGCGGTCCAAGGTTGAGGAGAATGTGATCAACATTAAGTGTCCTGTTTCAGGATGTTCAGGCCTGTTGGAGGCGGAGGATTGCCGTGCGATTCTCCCGGAGGAGGTGTTTGACAGGTGGGGGAAGGCGGCGAGTGAGGCGATGATTGCTGAGTCGGAGAAGTTCTACTGCCCCTTTGCCAACTGTTCTGCATTGTTGATTGATGATGGGAGGGTGAAGGTTAGTCAATCGGAGTGCCCTGATTGCAGGAGGTTGTTCTGCGCGCAATGCAAGGTGCCGTGGCACGCAGGGGTCACGTGTGTTGAGTATCAGAAGCTGGGGAAGGATGATAGGGGGAAGGAAGATTTGATGCTGATAAAGCTTGCTAAGGATAAGAAATGGAGGAGGTGCCCCAATTGTAAACTATATGTTGCCAAATCTGAAGGCTGCATGTACATGAGATGCAGGTGTGGACATACCTTCTGTTATAACTGTGGAACTCCTAACTTAAATAAGAAGAGCCATTACTGCGACACCTGTAGGCGTACGTACTAA 1482 0.5304 MGLTYSCFHPLTRRRTRKRVAAHSSAVKVTPAAGTNTFPPTSAGNGLHTVTDHSKTNYDGENNDVKVLNSEKDVIGESSNDAPPFICEICTETKTAWESFTATTTTCSHHAFCSECVFTYVSSKLQQNQINITCPIPECTGLLEAEDCRAILPPEVVDRWLTALCEAIITASEKFYCPFVDCSAMLIDDGVEKVTESECPNCRRLFCAQCKVPWHNEVTCEEFQKMNQEEKGLVVKLAKEMKKCPNCRFYIAKSDDCEVIRCRCGYAECSDTAGEGESSNAAPFICEICTETKTAWESFGITGCSHAYCSDCVAMYVRSKVEENVINIKCPVSGCSGLLEAEDCRAILPEEVFDRWGKAASEAMIAESEKFYCPFANCSALLIDDGRVKVSQSECPDCRRLFCAQCKVPWHAGVTCVEYQKLGKDDRGKEDLMLIKLAKDKKWRRCPNCKLYVAKSEGCMYMRCRCGHTFCYNCGTPNLNKKSHYCDTCRRTY* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1955 493 MobiDBLite consensus disorder prediction 29 53 - -
Lja6g1955 493 SMART ibrneu5 426 489 IPR002867 -
Lja6g1955 493 SMART ibrneu5 158 220 IPR002867 -
Lja6g1955 493 SMART ibrneu5 354 416 IPR002867 -
Lja6g1955 493 Pfam IBR domain, a half RING-finger domain 167 220 IPR002867 -
Lja6g1955 493 Pfam IBR domain, a half RING-finger domain 361 416 IPR002867 -
Lja6g1955 493 Pfam IBR domain, a half RING-finger domain 436 478 IPR002867 -
Lja6g1955 493 SUPERFAMILY RING/U-box 283 363 - -
Lja6g1955 493 SMART ring_2 446 489 IPR001841 -
Lja6g1955 493 SMART ring_2 286 333 IPR001841 -
Lja6g1955 493 SMART ring_2 87 137 IPR001841 -
Lja6g1955 493 ProSiteProfiles TRIAD supradomain profile. 282 493 IPR044066 -
Lja6g1955 493 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 71 263 - -
Lja6g1955 493 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 277 465 - -
Lja6g1955 493 ProSiteProfiles TRIAD supradomain profile. 83 290 IPR044066 -
Lja6g1955 493 ProSiteProfiles Zinc finger RING-type profile. 286 332 IPR001841 -
Lja6g1955 493 ProSitePatterns Zinc finger RING-type signature. 304 313 IPR017907 -
Lja6g1955 493 SUPERFAMILY RING/U-box 363 421 - -
Lja6g1955 493 MobiDBLite consensus disorder prediction 19 60 - -
Lja6g1955 493 ProSiteProfiles Zinc finger RING-type profile. 446 490 IPR001841 -
Lja6g1955 493 SUPERFAMILY RING/U-box 83 167 - -
Lja6g1955 493 SUPERFAMILY RING/U-box 167 226 - -
Lja6g1955 493 Gene3D - 413 492 - -
Lja6g1955 493 ProSiteProfiles Zinc finger RING-type profile. 87 138 IPR001841 -
Lja6g1955 493 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 263 IPR031127 GO:0004842|GO:0016567
Lja6g1955 493 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 277 465 IPR031127 GO:0004842|GO:0016567
Lja6g1955 493 SUPERFAMILY RING/U-box 428 490 - -
Lja6g1955 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 171 IPR013083 -
Lja6g1955 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 368 IPR013083 -
Lja6g1955 493 SUPERFAMILY RING/U-box 233 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1955 Lja-Chr6 47434010 47435920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1955 286 477 C3H Transcription Factor Family AT2G19610 30.049 1.55e-21 95.1