Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1954 ATGATGTTCCATTCTCAGGGTGCTTCAAGACATTGTAGTCTCCTTGCTGTTCTGAGTGGTAAATCACTTGATAGTAAGCAGAAGCAGAAGCTGGATGCTGCTTCCGAGGATCAATCTTCATACCCCTTTCCAGAGCTTACTTCCTCTGGGCGCCTTGAGGTTAAAGTATTGACCAGGCCTAGTGCTGATGAACTTGGTCGGGTTCTTGAGCAACTGCAGCCGGATTTTGTTTATCTACAAGGGCAGCAGCTAGAAGATAGGGGAGAAATTGGGTCTCTTGTATGGGATGATTTTGACCTGTCTATCCCAGAAGCTTTATGCGGATTATTTTCATCGTCCAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAAATTGGCAGAGGCACTTCGTTTTAAGGGAGTTCCTTACACTATCTACTGGAAAAATGATTTTTCAAAGTGTGCAGCTTCACATTTTCATCAAGCCTTTCTCTCAGCGGTACAGCGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGACTATACTGTGTACAAAACAATGTCTTACCTCATAACAGTCGGAAGGGTGGTGGTAAGCTTGGGCCACAAATTCTTGGGGATCCTCCTGAAATTGATGTTAGTCCATGTGAAGCAGACATGGAGGAAGATGAATGTACACCTGAAACTATTTCTGCCATAACGATATATGATGATGCTGTGAATATGAGATTTCTTGTTTGTGGAGTTCCCTGCACATTGGATGCATGTTTATTGGGGTCATTAGAGGATGGACTCAATGCTCTCCTATGTACAGAAATACGTGGATTTAAACTTCACAACCGCACAAGTGCTCCACCACCACCTCTCCAGGCAGGAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGCTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGATACTTGTTTTAATGATCAGATTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAACTTGTCCAAGCAGCTCCTGATCATGAACAAGTCAAATTACCTTCATCTGAGCCTCGAAGATCAGCCTCTGTAGCCTGTGGATCTAGTGTTTTTGAAGTTTGCATGCGAGTTCCTACATGGGCTTCTCAGGTTTTAAGACAGCTAGCACCAAATGTTTCATACCGCAGCCTAGTCATGTTGGGAGTTGCTAGTATTCAAGGATTGGCGGTTGCTTCTTTTAATAAGGATGATGCTGAACGTCTTCTTTTCTTTAGTTCAAAGCGGGAGAAAGATAAGTGTCCTAAAGAACCTGTTTTCTCTGGGAATCCTAGTTGGCTGAGGCCTCCAGCACCTAGTCGAAAAAGATCTGAACTATGCTCTAGAACAAAGTCTATTAATACTAGTAGCCTGAAAGTTGAAGATATTGGCAGTGATAGACAGAAATCAAATTATGCTGCAATGAGGCCAGTCCCTCACTCTCAACGCCAGAAGATTCTCCCCTTTTCTGGATTGTATGAAGGTGAAAGATATAATGGAGACCATGGAAAATCACAGCAGCTACCTGCTCCAATTAAGCATCATGTTTCAGGCCCTAATTCAGTTACTCATAGGAAATCTGTGTCGAACTCGTTTCAAGCTAGCCAGATTATTTCTTTGAATCCCCTGCCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATAAGAGCTTGCTCAGAGGAGGAATTCCTGAGGGATGTGATGCAGTTTCTGATCCATCGAGGGCATACTCGTCTCATCCCGCAAGGTGGGCTTGCTGAGTTCCCTGAAGCCATTCTGAATGCAAAACGCCTTGACCTTTTCAACTTATATAGAGAGGTGGTGTCAAGGGGAGGTTTTCACGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGCAATCACACACTGACAAACAAAATGACTGGTGTTGGCAATACGCTCAAGAGACACTACGAAACTTATCTTTTAGAATACGAGTTAGCTCACGATGACGTAGATGGAGAATGCTGCTTGTTGTGTCACAGCAGTGCAGCAGGTGACTGGGTGAACTGCGGTATATGTGGTGAGTGGGCACATTTTGGCTGTGATCGGCGGCAGGGACTCGGAGCATTTAAGGACTATGCAAAAACTGATGGACTGGAGTACGTTTGCCCTCATTGCAGCATATCAAATTTCAGTAAGAAGTCTCAGAAAACTGCAAATGGTTATTAA 2259 0.4347 MMFHSQGASRHCSLLAVLSGKSLDSKQKQKLDAASEDQSSYPFPELTSSGRLEVKVLTRPSADELGRVLEQLQPDFVYLQGQQLEDRGEIGSLVWDDFDLSIPEALCGLFSSSKLPNTVYLETPKGEKLAEALRFKGVPYTIYWKNDFSKCAASHFHQAFLSAVQRTSSHTWDAFQLALASFRLYCVQNNVLPHNSRKGGGKLGPQILGDPPEIDVSPCEADMEEDECTPETISAITIYDDAVNMRFLVCGVPCTLDACLLGSLEDGLNALLCTEIRGFKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQILENHIKKELIEKSQLVQAAPDHEQVKLPSSEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRSLVMLGVASIQGLAVASFNKDDAERLLFFSSKREKDKCPKEPVFSGNPSWLRPPAPSRKRSELCSRTKSINTSSLKVEDIGSDRQKSNYAAMRPVPHSQRQKILPFSGLYEGERYNGDHGKSQQLPAPIKHHVSGPNSVTHRKSVSNSFQASQIISLNPLPMKKHGCDRAPIRACSEEEFLRDVMQFLIHRGHTRLIPQGGLAEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNKMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTANGY* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1954 752 ProSiteProfiles ARID domain profile. 575 679 IPR001606 GO:0003677
Lja6g1954 752 SUPERFAMILY ARID-like 576 690 IPR036431 GO:0003677
Lja6g1954 752 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 752 - -
Lja6g1954 752 Gene3D - 572 678 IPR036431 GO:0003677
Lja6g1954 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 742 IPR013083 -
Lja6g1954 752 CDD ARID 577 675 - -
Lja6g1954 752 Pfam ARID/BRIGHT DNA binding domain 578 675 IPR001606 GO:0003677
Lja6g1954 752 SUPERFAMILY FYVE/PHD zinc finger 678 740 IPR011011 -
Lja6g1954 752 CDD PHD_ARID4_like 685 736 - -
Lja6g1954 752 SMART ARID_2 572 675 - -
Lja6g1954 752 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 752 IPR042293 -
Lja6g1954 752 MobiDBLite consensus disorder prediction 439 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1954 Lja-Chr6 47392165 47400023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1954 2 751 ARID Transcription Factor Family AT3G43240 65.206 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja6g1954 ARID 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1954 - - gmx:100808357 1299.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1954 6 47392165 47400023 Lja6g1954 6 47392165 47400023 ECH