Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1950 ATGGCTCTTTCTTCAACTAAACAGTTAAGTCAAACACTAATGGGAATACCCATTATCACATTCATCTTCTTGTTTCTAGGACTGCATGCTGCTGCTCCCACTAACTTCGTTGGATCAGAGTCCCTGAAGGTTTCTCCTCCTGAATTTGCCGGGTCAGTGAGAGATATAGTTGACATCCTTCATGAAGTCACCTCCATTCTCTCCGAATTCGGCGGGGGCACCGGCTTTGGCGATTCTCGTGTCTCTAACGCCATATCTGATTGCCTCGACTTGCTTGATCTCTCCTCTGATGCGCTTGACTGGTCCGTCTCCGCAACAGAGACTCCCAAAGGGAAGAATAACAGTACTGGGAACCTAAGCTCTGATCTGAAGACATGGCTAAGTGCTGCATTGTCGAATCCAGACACATGCATGGATGGGTTTGGAGGAACAAATGGCATGGTGAAGGGTCTAGTGTCTGTTGGCCTTGGCCAAATGATGTCGCTGCTGAAGCAACTCCTGACTCAGGTGAACCCTGGTTCGAATCACTTCAGCGCGACCGAGGGCCAAGGCCAATTTCCTCCATGGGTCAAACCAGGAGACAGGAAGCTGCTGCAGGCGGAAAATGGGGACCGTGTGGATGCTGTGGTGGCGGCTGATGGGAGCGGGAACTACACTACGGTAAAGGATGCGGTGTTGGCAGCACCTGATCATAGCTTGAAACGTTTTGTGATATATATAAAGAGGGGTGTTTACCATGAGAATGTTGAGATCAAGAAGAAGAAGTGGAACTTGATGATGATCGGAGATGGGATCAATGCTACTGTCATTTCCGGTAACCGGAGCTTCGTCGGCGGTTCGACAACGTTCCGGTCAGCTACCTTTGCTGTGAGTGGTAGGGGGTTCATAGCACGAGACATCACCTTCCAGAACACTGCAGGGCCAGAGAATCACCAGGCAGTGGCCCTAAGATCTGACTCTGACCTCTCTGTATTCTACCGATGTGGGATCTTCGGTTACCAAGACAGCCTCTATGCTCACACCATGCGTCAATTCTACCGGGAATGCAAGATCAGTGGCACCGTGGATTTCATCTTTGGAGATGCAACCGCGGTGTTCCAACATTGCCAAATACTCGTCAAGAAAGGCTTGCCAGATCAAAAGAACACCATCACAGCTCACGGTCGAAAAGACCCTGGGGAACCAACCGGTTTCTCCATACAATTCTCTAACATCTCGGCCGATTCAGACCTTCTCCTTTCAGCTAATCACTCCACCACCCACACGTACCTCGGGAGACCGTGGAAGCAATATTCTAGAACAATTCTCATGCAGTCTTACATAAGTGATGTGTTAAGACCGGAAGGGTGGTTAGAGTGGAATGGGGATTTCGCTCTGGATACATTGTACTATGCTGAGTACATGAATCATGGGCCAGGAGCGGGCCTAGCCGACCGAGTTAAATGGCCGGGGTACCATGTGATGAATGATTCTAGACAAGCTAGTAACTTCACAGTGACACAATTTATTGAGGGGAATCTGTGGTTACCTTCCACAGGTGTAACTTTCACTGCTGGACTGGGAGTTTAA 1569 0.4939 MALSSTKQLSQTLMGIPIITFIFLFLGLHAAAPTNFVGSESLKVSPPEFAGSVRDIVDILHEVTSILSEFGGGTGFGDSRVSNAISDCLDLLDLSSDALDWSVSATETPKGKNNSTGNLSSDLKTWLSAALSNPDTCMDGFGGTNGMVKGLVSVGLGQMMSLLKQLLTQVNPGSNHFSATEGQGQFPPWVKPGDRKLLQAENGDRVDAVVAADGSGNYTTVKDAVLAAPDHSLKRFVIYIKRGVYHENVEIKKKKWNLMMIGDGINATVISGNRSFVGGSTTFRSATFAVSGRGFIARDITFQNTAGPENHQAVALRSDSDLSVFYRCGIFGYQDSLYAHTMRQFYRECKISGTVDFIFGDATAVFQHCQILVKKGLPDQKNTITAHGRKDPGEPTGFSIQFSNISADSDLLLSANHSTTHTYLGRPWKQYSRTILMQSYISDVLRPEGWLEWNGDFALDTLYYAEYMNHGPGAGLADRVKWPGYHVMNDSRQASNFTVTQFIEGNLWLPSTGVTFTAGLGV* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1950 522 Pfam Pectinesterase 207 506 IPR000070 GO:0030599|GO:0042545
Lja6g1950 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 171 IPR035513 -
Lja6g1950 522 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Lja6g1950 522 CDD PMEI-like_4 18 174 - -
Lja6g1950 522 Pfam Plant invertase/pectin methylesterase inhibitor 82 164 IPR006501 GO:0004857
Lja6g1950 522 SMART PMEI_2 32 158 IPR006501 GO:0004857
Lja6g1950 522 Gene3D - 204 520 IPR012334 -
Lja6g1950 522 SUPERFAMILY Pectin lyase-like 207 519 IPR011050 -
Lja6g1950 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 156 IPR035513 -
Lja6g1950 522 PANTHER PECTINESTERASE 44 520 - -
Lja6g1950 522 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 44 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1950 Lja-Chr6 47348367 47351918 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1950 14 520 Carbohydrate Esterase AT3G43270 63.671 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1950 K01051 - gmx:100801813 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1950 6 47348367 47351918 Lja6g1950 6 47348367 47351918 ECH