Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1946 ATGGCATTTCAGGATTTTGATGTCATTTCAGAACGGCGAAAGAATGAAGAGAAGATGAAAATGAGAAAGAAGATTATCATCATTGGAATTTCCTCCATTCTCCTTGCATGTGTGGTAGCTGCTGCAGCATTTGTTGTTGTCAAAAGAACTGGCCCTGACAGCAACAACAAAGTGAATGCTCCCTCAGCACCTGCGAACGCCCAACAAGTCGATCAATATTCAAGGCTTGTGAAAATGATATGCAGCTCAGCACAATACAAGAGCAAATGTGAAAGCACCCTTACTGAGGCATTGAAGAAGGACCCTAGACATGCAAAGCCAAAGGATCTTCTCTTGATTTCCATGGTGCTTGCTGAGGCTGAGATTAACAAGGCCTTCAACAAAACCGCCACCTTGAAGTTTGCTTCTGAGGAGGAGAAAGGAGCATATGAAGATTGCAAGCAGCTCTTTGAGGATGCCAAGGAAGAAATGGGATTCTCTATCACTGAAGTTGGATCAAATGATTTGGCTAAGCTTTCCGAGAAATCTTCTGAACTTAACAACTGGCTCAGTGCAGTCATATCTTACCAACAGACCTGCATTGATGGGTTTCCAGAAGGAAAATTGAAGACTGAATTTGAGAAGCTCTTTAAGGAATCTCGGGAACTTATTAGCAATTCCCTTTCTGTTGTGTCAGAGGTGTCTACATTCTTTTCTGCATTCGATGGAGCTTCAGGGTTTCACTTACCATGGGGAAAAACTGATGCCCCTCTAGCTCCTGCTCATGCTCCTGGTTCTGGCATTGTTCCTGCTCCTGGTCCTGCTCCTGGTCCTGGTTCAGCTGCTCCTGGCCCATCTCCTGTTTATGCTCCTGGACCTGCTCCAATTTTGGCTCCTGGTCCTGGTCCTGCTTGGCTTAGCCTTCCAGAGTTGAAGGGAACAGATGAGAAACCCATACCTAATGTCACGGTGGCAAAAGATGGCAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGGCAGCAATCCCACCAACCTACGAAGGAAGGTACGTGGTTTATGTTAAAGAAGGAATATATGATGAAACAGTGACGGTGACAAAGAAAATGGTAAATGTAACCATGTATGGTGATGGATCTCAAAAGAGCATCATCACTGGGAGCAAAAATTTTGTGGATGGAGTCAGGACTTTCCAAACTGCCACATTTGTGGTACTTGGAGAAGGGTTCTTGGGCAGAGAAATGGGATTCAGAAACACTGCTGGAGCAGAAAAACACCAAGCTGTGGCTGCCAGAGTACAAGCAGATCGTGCAGTGTTTGTAAAATGTGCCTTTGAGGGATACCAAGACACTCTATACGCCCAAACCCACAGACAGTTCTACCGTGATTGTGTCATTGCCGGCACAATTGACTTCATCTTTGGTGATGCAACTGCAGTGTTCCAGAACTGCACTATGGTTGTTAGAAAACCACTGGACAACCAGCAGAACATTGTCACTGCTCAAGGGAGACTTGAAAAGCAAGAAAACACAGGCTTTGTTCTCCAAAACTGTGTGATCAAGGCTGATGAACAACTTGTTCCAGTGAAGGGTAAGATCAGGAACTACCTTGGGAGGCCATGGAAGGAGTACTCAAGAACCATCATCATCGAATCAGAAATTGGGGACCTTATCCACCCTGATGGGTGGCTACCTTGGGAAGGAAACTTTGCACTCAGCACATTATATTATGCTGAATATAACAACAAAGGACCTGGTGCCAGCACTAATGCCAGGGTCAATTGGCCTGGCCGCCATGTCATTAACCGGGATGAGGCTGGCCAGTTTACAGTGGAGACTTTCTTGCAAGGGACATGGATCAATGGCACAGGTGTACCAGCTCAGCTGGGCTTGTACAATTGA 1878 0.4569 MAFQDFDVISERRKNEEKMKMRKKIIIIGISSILLACVVAAAAFVVVKRTGPDSNNKVNAPSAPANAQQVDQYSRLVKMICSSAQYKSKCESTLTEALKKDPRHAKPKDLLLISMVLAEAEINKAFNKTATLKFASEEEKGAYEDCKQLFEDAKEEMGFSITEVGSNDLAKLSEKSSELNNWLSAVISYQQTCIDGFPEGKLKTEFEKLFKESRELISNSLSVVSEVSTFFSAFDGASGFHLPWGKTDAPLAPAHAPGSGIVPAPGPAPGPGSAAPGPSPVYAPGPAPILAPGPGPAWLSLPELKGTDEKPIPNVTVAKDGSGNFKTISEALAAIPPTYEGRYVVYVKEGIYDETVTVTKKMVNVTMYGDGSQKSIITGSKNFVDGVRTFQTATFVVLGEGFLGREMGFRNTAGAEKHQAVAARVQADRAVFVKCAFEGYQDTLYAQTHRQFYRDCVIAGTIDFIFGDATAVFQNCTMVVRKPLDNQQNIVTAQGRLEKQENTGFVLQNCVIKADEQLVPVKGKIRNYLGRPWKEYSRTIIIESEIGDLIHPDGWLPWEGNFALSTLYYAEYNNKGPGASTNARVNWPGRHVINRDEAGQFTVETFLQGTWINGTGVPAQLGLYN* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1946 625 TIGRFAM PME_inhib: pectinesterase inhibitor domain 70 225 IPR006501 GO:0004857
Lja6g1946 625 ProSitePatterns Pectinesterase signature 2. 458 467 IPR033131 -
Lja6g1946 625 SMART PMEI_2 72 223 IPR006501 GO:0004857
Lja6g1946 625 CDD PMEI-like_3 80 229 - -
Lja6g1946 625 Pfam Plant invertase/pectin methylesterase inhibitor 76 222 IPR006501 GO:0004857
Lja6g1946 625 MobiDBLite consensus disorder prediction 260 287 - -
Lja6g1946 625 PANTHER PECTINESTERASE 304 623 - -
Lja6g1946 625 PANTHER PECTINESTERASE 14 244 - -
Lja6g1946 625 PANTHER PECTINESTERASE 304 623 - -
Lja6g1946 625 PANTHER PECTINESTERASE 14 244 - -
Lja6g1946 625 Gene3D - 310 623 IPR012334 -
Lja6g1946 625 Pfam Pectinesterase 314 609 IPR000070 GO:0030599|GO:0042545
Lja6g1946 625 MobiDBLite consensus disorder prediction 253 287 - -
Lja6g1946 625 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 225 IPR035513 -
Lja6g1946 625 SUPERFAMILY Pectin lyase-like 314 618 IPR011050 -
Lja6g1946 625 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 227 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1946 Lja-Chr6 47311726 47314320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1946 1 625 Carbohydrate Esterase AT4G33230 45.525 0.0 554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1946 6 47311726 47314320 Lja6g1946 6 47311726 47314320 ECH
Lja4g1462 4 13449708 13458565 Lja6g1946 6 47311726 47314320 PCT