Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1945 ATGTCAACCACCCGGTCCACCCCCACACTCATCTTCTTCTTCTTCTTCCTGGCCCTATGCTATAACCCCTCATATTGTGCTGCACAAACATCAAACTTCATCCACACTGCAAGAACAGTACGTCATGTTCTCAACGATGTCACCAACGTACTACGGGATGAGCTGAGCACCATGGGCAGCGTTGACAACTCTCGGTTGTCCAACGCCATATCGACGTGTTTGGAGCTGCTGGATTTGTCAACAGACGAGATCGGTCGGTGCATGTCAGCATTTGAGGGCTTCGAAGGCAAGCATGAGGGTACTGGAAATTTGAGTTCAGATTTGAGGACATGGCTGAGTGCTATAGTTGCTGATACACATACATGCATGGAGGGTTTTGAAGGCACCAACAATGGTCGTGTGAAGGATCTGATATCCCCCAAAGTTGACCAAGTGAACTCGCTAGTTCATGAGCTTTTCACCCTTGTGCATCATGTTTCACATCAGTCCAACAGCCAAGGCCAGGGTGTCGATGGAAGAGGGTTTATAGCACAGCGCATATCCTTCAGGAACACCGCAGGGCCTGAATATCATCAAGCTGTCGCTTTGAGATCAGCAGCTGATCTTTCGGTCTTTGACGAATGTGAGATTTTCGGTTACCAAGACAGTTTGTATGCTTATTCACAGCGACAGTTCTACAGATATTGCTACATCAGGGGCACGGTGGACTTCATATTTGGACACGCCTCTGCGGTTTTCCAATCTTGCAATTTATTGGTCAAGAAAGGATTGCCAATGCAAAAGAACACTATCACAGCCCAAGATAGAACAAGCTCAAGCCTAGCATCTGCGTTCTCCTTCCAGTTCTGCAAAATATCAGCAGATCTCGACCTTCTACCCTTCGTTGGCTCCATATCGACATACCTTGGAAGACCATGGAAGCAATATTCTAGAGTTGCTTTCATGCAATCCTACATGAGTGATGTGGTGAGCCCTGAAGGATGGTTGGAGTGGAGTGGTACATTGTATTTAGACACATTGTACTATGCTGAGTACAATAACTATGGACCAGGAGCTAGGCTAGATAGACGGGTTAAATGGGCAGGCTTTCATGTGATTACTGACTCTAGCCAGGCTAGCGAGTTCACGGTGTCTGAACTCATTATGGGGGAACAATGGCTACCTTCAACTGGAGTAGCCTTTGTTCCTGGATTAGGGAACTAA 1203 0.4697 MSTTRSTPTLIFFFFFLALCYNPSYCAAQTSNFIHTARTVRHVLNDVTNVLRDELSTMGSVDNSRLSNAISTCLELLDLSTDEIGRCMSAFEGFEGKHEGTGNLSSDLRTWLSAIVADTHTCMEGFEGTNNGRVKDLISPKVDQVNSLVHELFTLVHHVSHQSNSQGQGVDGRGFIAQRISFRNTAGPEYHQAVALRSAADLSVFDECEIFGYQDSLYAYSQRQFYRYCYIRGTVDFIFGHASAVFQSCNLLVKKGLPMQKNTITAQDRTSSSLASAFSFQFCKISADLDLLPFVGSISTYLGRPWKQYSRVAFMQSYMSDVVSPEGWLEWSGTLYLDTLYYAEYNNYGPGARLDRRVKWAGFHVITDSSQASEFTVSELIMGEQWLPSTGVAFVPGLGN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1945 400 Gene3D - 129 398 IPR012334 -
Lja6g1945 400 PANTHER PECTINESTERASE 27 160 - -
Lja6g1945 400 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 27 160 - -
Lja6g1945 400 Pfam Pectinesterase 167 383 IPR000070 GO:0030599|GO:0042545
Lja6g1945 400 Pfam Plant invertase/pectin methylesterase inhibitor 41 152 IPR006501 GO:0004857
Lja6g1945 400 SMART PMEI_2 29 155 IPR006501 GO:0004857
Lja6g1945 400 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 169 398 - -
Lja6g1945 400 PANTHER PECTINESTERASE 169 398 - -
Lja6g1945 400 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 22 158 IPR035513 -
Lja6g1945 400 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Lja6g1945 400 SUPERFAMILY Pectin lyase-like 163 397 IPR011050 -
Lja6g1945 400 CDD PMEI-like_4 21 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1945 Lja-Chr6 47246888 47250695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1945 169 398 Carbohydrate Esterase AT3G43270 62.174 7.51e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1945 K01051 - gmx:100798620 345.51