Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1935 ATGGAAGAAAAAGTTGCAATAAAAAAATTGCTGGAATTTGCAGAAAGGCCATCATCTGATAATACAGATCATGCACCAAACATGACCCAGGAACCCTCCTTTCAGAACAATACTATGGGATCTACGTTTCTCAGTTTGAGCTTGATCAATAATAGTTCAGAACAACTTCCCCACCAAATTCAAGGAGAGCCTCTAAGCCAAATGGGCATGCTGCGAGTGAAGCTTGAGGAAGCAAAGAAGGAGAATGAGAGTTTAAAAGCTATGCTAGTTCAGGTTAATGAACACCACACTGTTCTTCAAAATCGTTTACTTTTGGCGATGCAGCACCATCAATCTTCAATGTTACCTCGGAATAATCATGACTTGCTGAAGGGAAATAGACAAGATGATGAGGAGAAAGCAGTGTTACCCACCCGGCAGTTCTTAAATATTGGTGAGGCTTCATCTTCAGATCATGGCAGCAAAACAGAAGGATTTGCTTCAGCAGAAAAAATTGAGAAGAGCAGAAACATTGCATGTGATGTTGAAGGTGAAACCAACAGCCAAATAACATCGCAAGAAACAAAAAGCATAGACGAGCCTCAAACATCTGAGATTACTAGGAAAGCTAGAGTGTCCATACGTGCAAGATCAGATTTTTCTTTGATGGGTGATGGTTGTCAATGGAGAAAGTATGGACAAAAGACAGCAAAGGGCAATCCTTGTCCTCGAGCCTACTATCGATGCAGCATGGGAACTGCTTGTCCAGTTCGTAAGCAGGTGCAAAGATGTTTCAAGGATGAGACTGTTCTCATCACAACCTATGAAGGGAACCACAACCATCCACTCCCACCAGCAGCAAGACCAATAGCAAGCTTAACATCATCAGCACTCAACATGTTCCTTTCTCCAGGCTCAGCTACCACTTTACAACATGGAAGCACCACTGTATTCAACACACGACTCTTCTCTTCCTCTGTTTCCTCTGCTTTAGCTTCTTTCTCACCTTCTGCAACATGCCCCACTGTAACACTGGACTTCACCCAACCCACTAATAATAATAACTATTTGCAATTCCAAAGACCCTCTTCGCAATCACTGTTCCCTTATCCATTGCAAGGTTATAATTTCCCTCATCAAACACATGAGAGGTTGAACTTGTGTTCTTCTAAGCTCCCAACCATGATAACTACCCCATTTGACAAAAACCACCACCTTGCCTTGGTGGATGTTGTGAGTGAGGCTATAGCCAAAGATCCTTCTCTCCAAGCAGCATTGTTTGCAGCTGTTTCCTCACTGAAAATCAATAACCAAAACCCAACAAGTAAGAGTGATTATGACCCTGGTTCTAAACTGCCTACAATACCACTGATTTAG 1356 0.424 MEEKVAIKKLLEFAERPSSDNTDHAPNMTQEPSFQNNTMGSTFLSLSLINNSSEQLPHQIQGEPLSQMGMLRVKLEEAKKENESLKAMLVQVNEHHTVLQNRLLLAMQHHQSSMLPRNNHDLLKGNRQDDEEKAVLPTRQFLNIGEASSSDHGSKTEGFASAEKIEKSRNIACDVEGETNSQITSQETKSIDEPQTSEITRKARVSIRARSDFSLMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPIASLTSSALNMFLSPGSATTLQHGSTTVFNTRLFSSSVSSALASFSPSATCPTVTLDFTQPTNNNNYLQFQRPSSQSLFPYPLQGYNFPHQTHERLNLCSSKLPTMITTPFDKNHHLALVDVVSEAIAKDPSLQAALFAAVSSLKINNQNPTSKSDYDPGSKLPTIPLI* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1935 451 SUPERFAMILY WRKY DNA-binding domain 209 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1935 451 MobiDBLite consensus disorder prediction 177 196 - -
Lja6g1935 451 Coils Coil 68 95 - -
Lja6g1935 451 Pfam WRKY DNA -binding domain 218 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1935 451 MobiDBLite consensus disorder prediction 15 35 - -
Lja6g1935 451 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 437 IPR044810 GO:0003700
Lja6g1935 451 ProSiteProfiles WRKY domain profile. 211 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1935 451 MobiDBLite consensus disorder prediction 20 35 - -
Lja6g1935 451 MobiDBLite consensus disorder prediction 431 451 - -
Lja6g1935 451 Gene3D WRKY domain 201 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1935 451 SMART WRKY_cls 216 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1935 451 MobiDBLite consensus disorder prediction 177 193 - -
Lja6g1935 451 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1935 Lja-Chr6 47100899 47107127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1935 38 432 WRKY Transcription Factor Family AT1G62300 38.356 6.51e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g1935 WRKY 1.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1935 - - lja:Lj0g3v0256519.1 509.605