Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1930 ATGGTGATCATAAACTTTGCTGGGAAGAAGAAGAAAGAAGGGCAGGGAATGCGACTTGGGAAATACGAGTTGGGTAAGACACTTGGGGAAGGCAATTTTGGAAAAGTGAAGTTGGCCAAGAACACAGATTCTGGGAAATTGTATGCTGTTAAGATCCTTGAAAAGAACAAGATTATTGGACCCAATAACGTTGATCAGATAAAGAGAGAAATATCCACCTTGAAGCTATTGAAGCATCCAAACGTGGTTAGATTGTATGAGGTCTTGGCTAACAAATCCAAAATTTATATGGTGCTTGAGTACGTGAATGGGGGAGAGTTATTTGACAAAATTTCATCAAAAGGTAAACTTAAAGAAGCTGATGGTAGGAAAATGTTCCAGCAGTTGATTGATTGTGTGAGTTACTGCCATAACAAAGGTGTCTTCCACAGGGATCTAAAGCTAGAGAATGTTCTTGTGGATTCCAGAGGGAACATAAAGATAACCGATTTTAACCTCAGTGCTTTACCCCAACATTGCAGAGAAGATGGATTGCTGCATACAACATGTGGAAGCCCCAACTATGTTGCCCCTGAGATTCTTGCCAATAGGGGCTATGATGGTGCAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTGATTCTAACAGGATACCTTCCTTTTGATGACAGAAATCTTGCAGTTCTCTATCAAAAGATTTTTAAGGGAGAAGTTCAGATACCGAAATGGCTGTCACCTGGTGCTCAGAACATTGTAAAGAGGATTCTTGATCCCAATCCTAAAACACGGATAACAATGGATATGATCAAAGATGATGAATGGTTCAAGGAAGGCTATACACCAGCAAATCCTGAAGAAGATGAGGAAGAGGATCATGTGTACATAGATGATGAAGCCTTATCCATTCATGAATTGTCACCTAGATCCGAACAGGAGAGTCCAGAACCACCAACACTTATCAACGCGTTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTCTCTGAAAGGAAGATAAGATTTACATCAAACTATTCACCAAAAGATTTGACAGAGAAGATTGAGGAAATTGTAACAGAAATGGGATTTGGAGTCCAAAAGAAAAACGGAAAGTTGAAAGTTGTACAAGAGAACAAAGCACAGAAAAGTCTAGGTAGCCTCTCAGTGGCAGCAGAGGTTTTTGAAATAGGCCCATCATTGTATGTAGTAGAACTAAGGAAGTCTTATGGAGATGCTTCTGTATATAGACAGTTATGCAAGAAATTATCAAATGACTTGGGTGTTCCCCCAAGCCCCAGATAG 1335 0.4 MVIINFAGKKKKEGQGMRLGKYELGKTLGEGNFGKVKLAKNTDSGKLYAVKILEKNKIIGPNNVDQIKREISTLKLLKHPNVVRLYEVLANKSKIYMVLEYVNGGELFDKISSKGKLKEADGRKMFQQLIDCVSYCHNKGVFHRDLKLENVLVDSRGNIKITDFNLSALPQHCREDGLLHTTCGSPNYVAPEILANRGYDGATSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGEVQIPKWLSPGAQNIVKRILDPNPKTRITMDMIKDDEWFKEGYTPANPEEDEEEDHVYIDDEALSIHELSPRSEQESPEPPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNYSPKDLTEKIEEIVTEMGFGVQKKNGKLKVVQENKAQKSLGSLSVAAEVFEIGPSLYVVELRKSYGDASVYRQLCKKLSNDLGVPPSPR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1930 444 CDD CIPK_C 323 434 - -
Lja6g1930 444 Pfam NAF domain 319 378 IPR004041 GO:0007165
Lja6g1930 444 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1930 444 Gene3D Kinase associated domain 1, KA1 324 439 - -
Lja6g1930 444 Gene3D Transferase(Phosphotransferase) domain 1 15 323 - -
Lja6g1930 444 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Lja6g1930 444 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1930 444 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1930 444 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Lja6g1930 444 PANTHER - 12 439 - -
Lja6g1930 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lja6g1930 444 SUPERFAMILY Protein kinase-like (PK-like) 19 302 IPR011009 -
Lja6g1930 444 PANTHER CBL-INTERACTING PROTEIN KINASE 21 12 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1930 Lja-Chr6 47002240 47008892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1930 85 439 CBL-interacting serine-threonine protein kinases AT3G17510 70.704 8.05e-175 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g1930 Pkinase 6.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1930 K07198 - gmx:100815660 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1424 4 12893967 12898668 Lja6g1930 6 47002240 47008892 PCT