Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1923 ATGGCATCTGATCTAAATTCAGGGCTGTCCAAGAAAACGTTTGTTTTGGGATTGAAAGTATGGGTATTGATGGGGATAATAGTTGGGTTGTTCATTATAATCATTCTTGCGGTGCTATCAATATGTCTTAGTTTAAGAAAGAAGGCCAGAAGAGTTGGTGGCAACCTTCCCCTTAGCCATATCTTATCTGTTTCAGAAGAGATCAAAGAAATTAGAGTTGATCAAGTCTCATCAAATAATCACCAGCAAAATGGTGCTTTTATGAGTCTGAATGACAAATTTGGTGATGCGGTGTCTGAAAAGGTTTCGATCCAAACAAAGAACGGGGATAATAGTAGTCAATCAGGCTCATTTAGTCATTTAGAGAAAGATGTTTATGGCACTCAATCAGGTGAGGAGAGTGGTGCTAGGAGTTCTTCTGCTTACAGATCTTCACATCCAATAACTGCACCATCCCCTTTGACTGGTTTGCCGGAATTCTCTCACCTTGGCTGGGGCCACTGGTTTACATTAAGGGACCTGGAACTTGCAACCAACAGGTTTTCAAAAGACAATGTTATTGGTGAAGGGGGTTATGGAGTTGTTTATCGAGGTCAACTTATCAATGGGAATCCTGTGGCAATTAAGAAGCTCCTCAATAATTTAGGACAGGCTGAAAAGGAATTTAGGGTGGAAGTTGAAGCTATTGGTCATGTGCGGCATAAGAACTTGGTGCGACTTTTGGGCTTTTGCATTGAAGGCACTCACAGGTTGTTGGTTTATGAATATGTTAACAATGGCAATTTAGAGCAGTGGCTTCACGGAGCTATGCGACAGCATGGCTTTCTTACTTGGGAGGCTCGGATGAAAATTCTACTTGGAACAGCCAAAGCGCTGGCTTACTTGCACGAGGCAATTGAGCCAAAAGTGGTGCACCGAGATATTAAGTCGAGCAATATTCTAATTGATGATGACTTTAATGCCAAAATATCTGACTTTGGGCTGGCTAAGTTACTGGGTGCTGGAAAAAGTCATATTACAACTAGAGTAATGGGAACTTTTGGATATGTAGCTCCAGAATATGCCAATTCTGGGTTGCTAAACGAGAAGAGCGACGTTTACAGCTATGGGGTATTGCTCCTTGAAGCAATTACGGGAAGAGATCCAGTGGACTATAGCCGACCTGCAGCTGAGGTAAATTTGGTTGACTGGCTTAAGATGATGGTGGGGTGTAGGCGATCGGAAGAGGTGGTGGACTCCAACATTGAGACTAGGCCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACAGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGAGCCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCCATACCTCGAGAGGATCGAAGACGGCGTAAGAGTCAGGCAGGAAACAAAGATCTAGAGAGCCAGAGGGAGACTTCTGATACAGAGAAGAGTGATAATCCAGATTATAAGCCCAATGGCAGAAGGGACTAA 1503 0.4325 MASDLNSGLSKKTFVLGLKVWVLMGIIVGLFIIIILAVLSICLSLRKKARRVGGNLPLSHILSVSEEIKEIRVDQVSSNNHQQNGAFMSLNDKFGDAVSEKVSIQTKNGDNSSQSGSFSHLEKDVYGTQSGEESGARSSSAYRSSHPITAPSPLTGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYRGQLINGNPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSYGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGCRRSEEVVDSNIETRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNKDLESQRETSDTEKSDNPDYKPNGRRD* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1923 500 Gene3D Phosphorylase Kinase; domain 1 162 256 - -
Lja6g1923 500 SMART serkin_6 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1923 500 Pfam Protein kinase domain 182 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1923 500 ProSiteProfiles Protein kinase domain profile. 181 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1923 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Lja6g1923 500 PANTHER OS01G0323000 PROTEIN 2 499 - -
Lja6g1923 500 Gene3D Transferase(Phosphotransferase) domain 1 257 469 - -
Lja6g1923 500 PANTHER RECEPTOR-LIKE KINASE PLANT 2 499 - -
Lja6g1923 500 CDD STKc_IRAK 187 453 - -
Lja6g1923 500 MobiDBLite consensus disorder prediction 439 500 - -
Lja6g1923 500 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Lja6g1923 500 SUPERFAMILY Protein kinase-like (PK-like) 165 460 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1923 Lja-Chr6 46934583 46939919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1923 17 455 Trihelix Transcription Factor Family AT1G70460 39.189 2.24e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja6g1923 Pkinase 3.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1923 - - gmx:732653 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1420 4 12862509 12867082 Lja6g1923 6 46934583 46939919 PCT