Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1921 ATGGAGCCTAAGTTTCAGGATGAAAAGAATCAGAATATGTATGGACCAGTGGTGCCAGAGATGAAGGGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCATCAGATTGTAGGAGTAGTAAGCTGTTAACTGATTTTGATGCTGAAATTCCTGCAAATGCTGAAACTTCTATCAATTTGACTTCTGCCTGGGATGGTATCAACCCTGGGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAAGGGTGTTATTACTGAAGGAGTGGAGATGAATGATGAAACCGGTTCTCTTGGTTTGAACCTTGGGGGTCAAGTATTCCCTATCATGGAAGGGGAGGAAAAAAGTGGAAAGAAGTCAAAGATTACTGTGACTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTACTGCAAAGGATTACCACCGTCGCCACAAAGTTTGTGATGCGCATTCTAAGGCTAGCCAGGCTTTAGTGGGAAATGTTATGCAGCGATTCTGCCAACAGTGTAGCAGGTTTCATGTTCTTGAAGAGTTTGATGAAGGGAAGAGAAGCTGTCGTAGGCGTCTCGATGGCCACAATAGGAGGAGGAGGAAAACACATCCCGATGCTCCTGTAGTTAATGAAGGCCCTCCGAATGAAGAAAGGAGCAGTAGCTACCTGTTAACGAGTCTATTAAGGATACTGTCCAATATGCATTCAAACGGCTCAGATCATACGAGAAATCCGGATATTCTGTCTCGTCTGCTGGGGAACCTGGCAAGTATGGCTGGTACAGTTAATGGAAGCAATGTAGCGTCCTTATTGGAGGGATCTGAATGTTTGATAAAAGCTGGGACAACTGAAGCTTTACAGAATGTTCCGAACACAAATTCAAGGGTTCCTGAACCATCCAGACCGTTTGGTTCTTCTATCAAGATGGGCAATGACCTAATCCATCAAAACCCTCCAGAATCTAGGTTACAGTGTGTAGCGGTTCCTGCTAATGACATAGCACAGAAATGTATACCTTCAGGCAGTGGTGCAGTAGAAAGTTTAAAATCTCCTTTCGGACCACAGTCCTCAAAAGTGCCTCTGTCAAGGGACAACCTTTCAACCCAATTAGTTGCCGCAGAGACTGCAGTTGGAAGAACTGGATTAAGCAATATTGACCTGAATAATGTATATGATGATGTTCAGGATCATACTGAGAACCCCAGGAATTCCCATCCTTCATGGATACAATGCGAGCCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAAGTCAGATTCAACCTCTACCCAGTCACCATCCAGTTCTAGTGGAGAAGCTCAGAGTAGCACGGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTCCCCCTTGATTTACGATCACAGATCCTGAACTGGTTATCTCACAGTCCCTCAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTTCACCTAAAAAGTTCTGTATGGGAGGAGCTTCTTGCCACATCCAATGATTCTTTTTGGAGAACAGGATGGGTATATACAAGGGTGCGGCACTCTGTAGCTTTTCTTTATAATGGTCAGGTGGTCTTAGATGTGCCTTTGCGGCTCAAAAGCCCTGAGAATTGTGAGATTTTGTGCATTAAACCACTTGCTGTTTCTGCAAGTGCAAATGTAAAAATTATTGTGAAAGGATTGAACCTTTTCCTTCCCAGCGCAAGGTTGCTCTGTGCACTTGAAGGAAAGTATCTGGTACAGGATAGTTGTTTTGATTTAATTGAATGTGCTGACGCATTCATTGGACATCATGAACTCCAGCATCTCAGCTTCTCTTGTCGTATACCCAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATTTGCAATCTGGAAAATGTTATTGAGACAGCAGAGACTGCTGATGACATCCAGATAAAAGCCAAACTCATGGAAGAAAAGACTCGAGCATTGTATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCAAGAGCACCTGTCCAAGATCGCTTCCATTTTAATCGGTTCACATGGCTTGTTGGCTTCTCTATGGACCATGATTGGTGTGCTGTGATGAAAAAGCTCTTGGACCTTATCGTTGAGGGTGCTGTTGATACCGGAGATCACTCCTCCATTGAGCTTGCACTGTTAGACATGGGTCTTCTACACACAGCTGTAAAGAGAAATTGCAGGCCAATGGTGGAACTACTGTTAAATTTTGTGCCAGTTAAGGCTTCAGATGGTGGAGACAGTAAAGAGAAGCAAGTCAACAAATCCCCTGACAGGTTCTTATTTAGACCTGATACTACTGTGCCTGCTGGTTTGACCCCCCTTCATGTTGCAGCAAGTACGAATGGCTCCGAAAATATATTAGATGCATTGACTGATGATCCAGGAATGGTTGGAACTAAGGCATGGAAAAGTGCTAAGGATAACACAGGTTTGACACCTAATGACTATGCATCCCTGCGAGGTTACTACTCCTACATTCAACTTGTCCAGAGGAAAGCAAACAAGCAATTGCAAAGTCATCTTGTGCTTGATATCCCTGGCACCCTTGTACATGACAAGAAGCAGAAGCAATCAGATTGGCATAAGTCATCAAAAGTTTCAAGCTTGCAGACTGAGAAGATTGGAATAGCAACAATGCAGCATCATTGCGGGCTCTGCCAGCGCAAGCTGGCACATGGTGGCATGAGAAGGGCACTGGTTTACCGGCCGGCTATGCTGTCAATGGTGGCCATTGCAGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAGAGCTCACCAAGAGTTTATTATGTGTTCCATCCCTTCAGCTGGGAATCATTGGAGTATGGGTCTATCTAA 3018 0.4394 MEPKFQDEKNQNMYGPVVPEMKGVGKRSLEWDLNDWKWDGDLFTAKQLNSVPSDCRSSKLLTDFDAEIPANAETSINLTSAWDGINPGEGRRELEKRRKGVITEGVEMNDETGSLGLNLGGQVFPIMEGEEKSGKKSKITVTVCQVEDCRADLSTAKDYHRRHKVCDAHSKASQALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLDGHNRRRRKTHPDAPVVNEGPPNEERSSSYLLTSLLRILSNMHSNGSDHTRNPDILSRLLGNLASMAGTVNGSNVASLLEGSECLIKAGTTEALQNVPNTNSRVPEPSRPFGSSIKMGNDLIHQNPPESRLQCVAVPANDIAQKCIPSGSGAVESLKSPFGPQSSKVPLSRDNLSTQLVAAETAVGRTGLSNIDLNNVYDDVQDHTENPRNSHPSWIQCEPLKSSPPQTSRKSDSTSTQSPSSSSGEAQSSTDRIVFKLFGKDPNDFPLDLRSQILNWLSHSPSEIESYIRPGCIILTIYLHLKSSVWEELLATSNDSFWRTGWVYTRVRHSVAFLYNGQVVLDVPLRLKSPENCEILCIKPLAVSASANVKIIVKGLNLFLPSARLLCALEGKYLVQDSCFDLIECADAFIGHHELQHLSFSCRIPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICNLENVIETAETADDIQIKAKLMEEKTRALYFIQEMGWLLHRSRVKVRLGPRAPVQDRFHFNRFTWLVGFSMDHDWCAVMKKLLDLIVEGAVDTGDHSSIELALLDMGLLHTAVKRNCRPMVELLLNFVPVKASDGGDSKEKQVNKSPDRFLFRPDTTVPAGLTPLHVAASTNGSENILDALTDDPGMVGTKAWKSAKDNTGLTPNDYASLRGYYSYIQLVQRKANKQLQSHLVLDIPGTLVHDKKQKQSDWHKSSKVSSLQTEKIGIATMQHHCGLCQRKLAHGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFHPFSWESLEYGSI* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1921 1005 MobiDBLite consensus disorder prediction 410 458 - -
Lja6g1921 1005 SUPERFAMILY SBT domain 142 222 IPR036893 GO:0003677|GO:0005634
Lja6g1921 1005 Gene3D - 140 205 IPR036893 GO:0003677|GO:0005634
Lja6g1921 1005 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1004 IPR044817 GO:0003677
Lja6g1921 1005 SUPERFAMILY Ankyrin repeat 774 888 IPR036770 -
Lja6g1921 1005 MobiDBLite consensus disorder prediction 417 458 - -
Lja6g1921 1005 ProSiteProfiles Zinc finger SBP-type profile. 141 218 IPR004333 GO:0003677
Lja6g1921 1005 Pfam SBP domain 144 217 IPR004333 GO:0003677
Lja6g1921 1005 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 17 1004 - -
Lja6g1921 1005 MobiDBLite consensus disorder prediction 208 235 - -
Lja6g1921 1005 Gene3D - 742 919 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1921 Lja-Chr6 46914213 46922217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1921 25 1004 SBP-box Gene Family AT3G60030 44.760 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja6g1921 SBP 8.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1921 - - gmx:100776125 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1418 4 12839118 12845048 Lja6g1921 6 46914213 46922217 PCT