Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1913 ATGGCTGAAATTAATGAAGAGGCTCATGTGGACTTGTCTAATTTTGGAGGCATGAATGAGTCTGAGGATCTGAATGATATCTCAGATAATTCTGATGGAGATGATGTGGGAGCTGGATCGGAGTTTTTGTCTGAGCAGGATGCCGTTGAGTTTTACCAGCACTATGCCCAGTTTAAAGGTTTTGGGGTTAGGAAGGATGATGTTCGGCGCGATCGAAAAGGTAATGTTGTTAGTCGCCAGCTTGTTTGTAAAAGGGAAGGTGAGAGACATGAGAAGCATTTGAAAAAGGTTAGTCGAGTGAAAGAGGCTAAGCCAATTACCAGAGTATCATGCCAAGCTAAATTTCGTGTACGTTTCGAGGCAAACTCCAGCAAGTGGAAGGTTGTTTACTTTGAACCTGAGCACAATCATGAGTTGACACTGGCTAAGCAAGTTCATTTAATTCCGGCATTCAGGGGATTGACTAATGGTGATAAGGCTCAAGTTGACACACTAAAGCTCTATGGCGTGAGGAGTTGCAACATAATGGGTCTCATGATGGGACAAAAAGGAGGTCATGATTCAGTTGGTTTTTTGAAAAAGGACTTATACAACCATGTCGATAAGAATAAAAGGATAAGTTTAGGTGCTGTGAAATTGTTGCGTAGAGGTGCCATTTCTGCTGCATGCAATTTTCTTAGTGAATATGCCGCTGATGATGCTACAGAATTTTCAGCCGTAATTGAGGATATATACAAACTGGTCTCGAAAGTTCAGAAACGTCGTCATCCGAAATCTACTGAAGGTAATTTATTTGTGATTCGTGACCCAGCTGTCGTGAGAACCCGAGGTGCACGAAATAAGTTGAAGACTAAGAAGAAGAAAAGACTCTGTTCTAATTGCAGAAAGAGTGGCCACACAATCCGGACATGTCCTACATTATTTGAGGGAGTCGGAGATGATGAAGTAGATGAAGGAGATTCATCTGTTGAGCTGGATGATGATAGCATTACTGAAAATGGTTTTGCCACTAAGATCACCAATGATCCCTTTGAGCCTCGTGAAGGACACCGTGATCATTCAAGGGACCCTGTTAAGGAATCCGTCGATGTGTTAGGGTTTAGCAACTAA 1110 0.4225 MAEINEEAHVDLSNFGGMNESEDLNDISDNSDGDDVGAGSEFLSEQDAVEFYQHYAQFKGFGVRKDDVRRDRKGNVVSRQLVCKREGERHEKHLKKVSRVKEAKPITRVSCQAKFRVRFEANSSKWKVVYFEPEHNHELTLAKQVHLIPAFRGLTNGDKAQVDTLKLYGVRSCNIMGLMMGQKGGHDSVGFLKKDLYNHVDKNKRISLGAVKLLRRGAISAACNFLSEYAADDATEFSAVIEDIYKLVSKVQKRRHPKSTEGNLFVIRDPAVVRTRGARNKLKTKKKKRLCSNCRKSGHTIRTCPTLFEGVGDDEVDEGDSSVELDDDSITENGFATKITNDPFEPREGHRDHSRDPVKESVDVLGFSN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1913 369 MobiDBLite consensus disorder prediction 315 369 - -
Lja6g1913 369 MobiDBLite consensus disorder prediction 343 360 - -
Lja6g1913 369 ProSiteProfiles Zinc finger CCHC-type profile. 291 305 IPR001878 GO:0003676|GO:0008270
Lja6g1913 369 MobiDBLite consensus disorder prediction 1 37 - -
Lja6g1913 369 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 25 201 - -
Lja6g1913 369 SUPERFAMILY Retrovirus zinc finger-like domains 283 311 IPR036875 GO:0003676|GO:0008270
Lja6g1913 369 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
Lja6g1913 369 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 25 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1913 Lja-Chr6 46656154 46660249 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g1913 FAR1 1.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1913 - - ccaj:109792835 187.963