Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1908 ATGGAACAGTTGAAATTGGTTGAACATCCTGATGCCAAAGAGGATAATCCTCTTGGGCACGATCCAAAAAATGATAGTACACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTAGATGGGATCCGGCTGAACCGTGTCGGCCTATAATTGACGAAGCACCTGTGTTTTATCCAACTATCGAAGAGTTTGAAGACACACTCAGTTACATAGCAAAGATTCGCCCCCAAGCTGAACCTCATGGCATATGTAGGATCGTCCCTCCAGCTTGCTGGGTTCCACCCTGCCCTCTTAAGGAGAAAGATGTATGGGAAAATGCTAAGTTTCCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGGGAACCTATGAGGAAAAAGACTAGGGGAAGGAAACGAAAACGCCGAAAGAACTCCAAAACAGGCACTTGTAGGAAACTTGCCAATTCAGCTTCTGAAGTTGACAGTGCTCCTGAATCTGAAGAGAAATTTGGCTTTCAATCAGGGTCAGACTTCACGCTTAAAGACTTTCAGCAATATGCTAAGTTTTTTAAGGAATGCTACTTCGGGTTGAATGATGCCAATGAAGATGGAAAAAATAGTGAAAGTAACCACCAGAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAACAACCAACTGACGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCGTCCTTGAATAAGAGTGATTTGGATCAATATGCATTGTCTGGATGGAATCTAAATAACTTCCCCCGACTGCCAGGTTCTGTACTAAGTTTTGAGGGAAGTGACATCTCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTGGAGGATCATCACCTCTATTCGCTTAATTATCTGCACTGGGGTGACCCAAAAGTTTGGTACGGAGTCCCTGGAAGCCATGCTTCTGCTTTTGAACATTCAATGAGGAAGCACATGCCTGATCTATTTGAGGAAAACGCAAATCTACTCAATGAGCTGGTCACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGAGTGCCCGTATATCGCACTGTTCAGCATGCTGGGGAGTTTGTCATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCCGAGGCAGTGAATGTTGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCAGTCGACCTTTACAGTGTACAACGCCGTAAGACATCATTGTCACATGACAAGCTGTTATTTGGGTCAGCACTGGAAGCTGTACAAGCCCTTGCAGAGCCAACTCTTCAAACTGCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGAGTTCTTACGAGGGCAGTTAAGACAAGGATAAAGATTGAAGAAGAGAGGTTAGACCGTCTTCCAAGTCATTTCACGTCGCGCAAGATGGACAGTGACTTTGATTTGTACAAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTAGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAAGTTGTTCTGCTCCTGTGAAATGGACAAAAAATTTGTTCTGCTTCGATATACTGTTAATGAGCTAAATAAACTGGTTGAAGTATTAGAAGGAGAATCATCTGCTGTTGAGTTGTGGAAAAATAAAAGCTTCGGAATGGTTTCTGCTGATGCCAATCAGGTTTGCATTGATAAACCAGATGTGGAGAGAGACATGTACCGAACCAAGGATATTAAAGAAGGGGAAAGCTTAGCTGGTTGTGAAGGTGCCAAGGTTAAGTCAAATTTAAGTGCCCCTAGCAGTCCTTATAGTCATGTTACTTCAGAGATGATGCAGTCTGAGTGTCACCTTGTAACTTTTAGCACATTACGTGGTGGCAGTATTGATAGTCATAACGGCAACATTAATGATAATAAAATGGTCTTAGACAATGATGAGAAGGTGGATCAAGGAGGTTTTCTGGACTTGAATCTTGATGTTTCTGGTGAAAGTGAAAATGATAATAAGCGGATTAAAATAGAGGAAAAAGTACACTGTTCAGAGGCCAGAGAGGGTGACCTGTCTCTCTCACTCTCATCTTCTATTGTGAAGACAGATTTTTCATCATGTTCAAGGGATGTTTGCCGTTCTTCTACATTTGATGGTGTAAAATATAAGGTGGACCTGCAAATGGATTCAGATTCAAGAAAGCAACCCAACAGTATATTAAAAAATGAAGTCATAGACATTACGAGCACAAGCATATCTTTGGCACGTGAAAGCTGCCTAATGCAAATGTTTGGTGCTTCTGTCAAGCTTATAAGTTTGGGTTCTGTTGTTTGTGGAAAGCTGTGGTGCAGTAAGCACACGATATATCCCAAAGGATTCACAAGTCGAGTTGACTTCTTAAACATTCTTGATCCAACAAGAATTTCTAGCTATATTTGTCAAGTCATTGATGCTGGATTACTTGGCCCTCTTTTCAAGGTTACCATGGAGGAAAATCCAACTGAGGCTTTCACAGATATCTCAGCGGATAAGTGTTGGGAATCAGTTCTCAAGAGACTAAATTATGAAATCATGAGGCGGAAGAATCTTGGTGAGCTGGAACTTCCTCCCTTAGAGCTTCTGAAAAGGATTAATGGTCTTCGAATGTTTGGCTTCCTTTCACCATCCTTTATTCAGGCTATTGAAGCTCAAGATCCCAGTCATCAGTGTGTAGAGTACTGGAATCACAAAGTTCTCCTTGCATCTTCAGGCAGTTTCATTGATAACATAAAGCTCACATATGGTTCTAGCAGCTCTATAGATAATGTCAATACCAAAGTTTTTGGTATCAAATTGATTGTGCTGCCAAAAGATAACATAGATGGAAGTTGCCATTCCCTTGAAGAGATGAAACAAATACTACAAAGGGCAAGTCCTGATGAGTTAAGCACAATGCATAAGTTACTCAGCTCTGATGCACAGTGCTCTCAGTGGAGAATGGCATTGATAGATCTGATTGATGAGATCCAGAAAGCCTGTAGATAA 3123 0.4172 MEQLKLVEHPDAKEDNPLGHDPKNDSTLESSDSLRNRKISARWDPAEPCRPIIDEAPVFYPTIEEFEDTLSYIAKIRPQAEPHGICRIVPPACWVPPCPLKEKDVWENAKFPTRIQQIDLLQNREPMRKKTRGRKRKRRKNSKTGTCRKLANSASEVDSAPESEEKFGFQSGSDFTLKDFQQYAKFFKECYFGLNDANEDGKNSESNHQKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKASSLNKSDLDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAFEHSMRKHMPDLFEENANLLNELVTQLSPSILKSEGVPVYRTVQHAGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVDLYSVQRRKTSLSHDKLLFGSALEAVQALAEPTLQTAKNLKWRSVCGKDGVLTRAVKTRIKIEEERLDRLPSHFTSRKMDSDFDLYKERECFSCFYDLHLSAVGCECSPDRYSCLKHAKLFCSCEMDKKFVLLRYTVNELNKLVEVLEGESSAVELWKNKSFGMVSADANQVCIDKPDVERDMYRTKDIKEGESLAGCEGAKVKSNLSAPSSPYSHVTSEMMQSECHLVTFSTLRGGSIDSHNGNINDNKMVLDNDEKVDQGGFLDLNLDVSGESENDNKRIKIEEKVHCSEAREGDLSLSLSSSIVKTDFSSCSRDVCRSSTFDGVKYKVDLQMDSDSRKQPNSILKNEVIDITSTSISLARESCLMQMFGASVKLISLGSVVCGKLWCSKHTIYPKGFTSRVDFLNILDPTRISSYICQVIDAGLLGPLFKVTMEENPTEAFTDISADKCWESVLKRLNYEIMRRKNLGELELPPLELLKRINGLRMFGFLSPSFIQAIEAQDPSHQCVEYWNHKVLLASSGSFIDNIKLTYGSSSSIDNVNTKVFGIKLIVLPKDNIDGSCHSLEEMKQILQRASPDELSTMHKLLSSDAQCSQWRMALIDLIDEIQKACR* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1908 1040 MobiDBLite consensus disorder prediction 1 40 - -
Lja6g1908 1040 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Lja6g1908 1040 Pfam jmjN domain 57 90 IPR003349 -
Lja6g1908 1040 ProSiteProfiles FYR domain FYRN motif profile. 793 851 IPR003888 GO:0005634
Lja6g1908 1040 SMART JmjN_1 55 96 IPR003349 -
Lja6g1908 1040 SMART cupin_9 264 430 IPR003347 -
Lja6g1908 1040 Pfam C5HC2 zinc finger 517 569 IPR004198 -
Lja6g1908 1040 Gene3D Cupin 41 414 - -
Lja6g1908 1040 MobiDBLite consensus disorder prediction 122 165 - -
Lja6g1908 1040 MobiDBLite consensus disorder prediction 128 145 - -
Lja6g1908 1040 SMART fyrn_3 807 850 IPR003888 GO:0005634
Lja6g1908 1040 Gene3D - 796 937 - -
Lja6g1908 1040 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1039 - -
Lja6g1908 1040 SUPERFAMILY Clavaminate synthase-like 264 452 - -
Lja6g1908 1040 Pfam F/Y rich C-terminus 855 942 IPR003889 GO:0005634
Lja6g1908 1040 Pfam F/Y-rich N-terminus 800 848 IPR003888 GO:0005634
Lja6g1908 1040 SMART fyrc_3 857 945 IPR003889 GO:0005634
Lja6g1908 1040 ProSiteProfiles FYR domain FYRC motif profile. 853 943 IPR003889 GO:0005634
Lja6g1908 1040 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Lja6g1908 1040 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Lja6g1908 1040 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1908 Lja-Chr6 46478432 46485427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1908 757 979 JUMONJI Transcription Factor Family AT1G30810 45.291 7.10e-50 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja6g1908 JmjC 8.1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1908 - - lja:Lj6g3v1116100.1 1870.51