Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1898 ATGCGGTGCCAGCTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTATCCTAGAGGAGCCGGCAATGTTTGCTGTGCTTGGTGTAATGTGATTACCCCTGTTCCTCCTGCTGGGATGGAAATGTCACAGCTTTATTGTGGAGGCTGTAGGACATTACTAATGTATGCAAATGGAGCTACGAGCGTGAGATGTTCCTGCTGCAACACAATAACCCGTGTACCAGAATCTAACCAAGTCAGTCATATCCATTGTGGGAACTGCCGGACAGCACTCATGTATCCTCATGGAGCTCTCTCAGTCAAATGTGCAATTTGTCACTATATTACTAATGTCAGTATGACCAATGCAAGGTTTCCAATTCTTGTGCAGAGATCTAATGGAACAACCGAGTCTGAAACGACCACCTCTGAATCTGAGATAGCATCTTCTATTTCATCATCAAGGCCCCACTTCGAGAGCCAAACTGTTGTAGTAGAAAATCCCATGTCTGTTGATTCAAATGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTGCAACAAACCAGAGATGA 552 0.4475 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVSMTNARFPILVQRSNGTTESETTTSESEIASSISSSRPHFESQTVVVENPMSVDSNGKLVSNVVVGVATNQR* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1898 183 Pfam LSD1 zinc finger 84 108 IPR005735 -
Lja6g1898 183 Pfam LSD1 zinc finger 7 30 IPR005735 -
Lja6g1898 183 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lja6g1898 183 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Lja6g1898 183 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Lja6g1898 183 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Lja6g1898 183 PANTHER PROTEIN LSD1 1 182 IPR040319 -
Lja6g1898 183 PANTHER PROTEIN LSD1 1 182 - -
Lja6g1898 183 MobiDBLite consensus disorder prediction 126 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1898 Lja-Chr6 46353049 46358971 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lja6g1898 zf-LSD1 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1898 - - lja:Lj0g3v0054379.1 330.872