Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1888 ATGTCATCGAATCCAGAAATGGGAGCAGACGACGACGTTGAAGCCGCCGGCGCAGACGGCGGTTTCCGCTCCCCGATCGGCCGCAAGTACCGCCCTGTCTTAGCCAACGATCGTGCCGTCCTCGAAATGTCTTCCATAGATCCAGGATCTTCCTCTTCGTCTTCCTCTGTCATTCCAGATCCCCCTCCTAATCTCAGGAAAATCAATGTAGGTAGCAGTTTGAATGCGAGTTCAGATGCTAAAGAAGGGAAATCTTCTCATCCACCACAACCTAATGGTCCCCAGCAGGATTCTAAGCTTGAATTGTTTGGTTTTGATTCTCTTGTCAACATTCTTGGTCTTAAAAGCATGACTGGTGAGCAAGTTGCAGCACCATCTAGTCCTAGAGATGGTGAGGACATTACCATCCCTGCTGGGCTACCAAAGCCTCCTGCTCTCAGACTAGGTACAATGATGGGTGTATTCATTCCATGTTTACAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCTTGGATTGTTGGTATGGGTGGCATAGGAGGGACACTGTTGCTTGTTGCTTTATGTGGCACTTGCACCTTCCTTACTGCAATTTCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGAGGGCCGTACTATCTCATAGGACGTGCCCTTGGTCCAGAAGTTGGAGTTAGCATTGGACTATGCTTCTTCCTGGGAAATGCAGTTGCTGGAGCACTCTACGTATTGGGAGCTGTAGAAACATTTTTGAAAGCGGTTCCTGCTGCTGGGATTTTTAGAGAGACCATCACACAGGTTAATGGTACTACAATTGCACAACCAATTGAGAGTCCAAGTTCTCATGACCTGCAAATTTACGGGATTGTTGTGACTATTGTGTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCACCTGCTTTTCTTATACCTGTTTTATTCTCACTCATATGCATATATTTGGGAATTCTTTTGGCAAGGGAGGATCATCCCGCAGAGGGAATTACTGGGTTGAGTTTGGAGACACTTAAAGACAATTGGGGTTCAGAATATCAAAAGACTAACGATGCTGGAATTCCAGAACCTGATGGCTCTGTAAGCTGGAATTTCAATGCATTGGTGGGCCTTTTTTTCCCAGCTGTGACAGGAATAATGGCAGGTTCTAATAGATCATCTTCTCTGAAAGATACTCAACGATCAATTCCCCTTGGAACCTTAGCTGCAACTCTTGTAACTACTTTTATGTATCTTGTTTCCGTGATAATGTTTGGCGCCCTTGCTACTAGAGAGAAGCTTTTAACTGACAGGCTACTTACAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAGATTGGAATTATTCTTTCAACTATGGGTGCTGCTCTTCAGAGCTTGACTGGCGCCCCGCGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCCATTTTGAAATACTTTAAAGTTGCGGATGGCAGTGAGCCGCATGTTGCTACCCTTTTCACGGCTTTCCTATGTTCTGGGTGTGTCGTTATTGGGAATCTGGATCTTATCACTCCAACTGTAACTATGTTTTTCCTTCTATGTTATGCTGGTGTCAACTTATCCTGCTTCCTTCTCGATCTTCTAGATGCTCCTAGTTGGCGTCCTCGGTGGAAATTTCACCATTGGAGTCTGTCACTTGTGGGAGCATTACTTTGCATAGTGATCATGTTCCTAATTTCTTGGTCTTTCACTGTGGTGTCTTTGGCCCTTGCAAGCCTTATATATAAGTACGTGAGCCTCAAAGGAAAGGCTGGAGACTGGGGAGATGGTTTCAAAAGTGCTTATTTCCAACTAGCACTTCGTAGCCTTAGGTCACTAGGAGCAAGTCAAGTGCACCCAAAGAATTGGTATCCAATTCCACTAGTATTTTGCCGACCCTGGGGCAGACTACCAGAAAATGTTCCCTGTCATCCCAAACTTGCAGACTTTGCTAACTGTATGAAGAAGAAAGGTCGTGGAATGTCAATATTTGTCTCTATACTAGACGGGGATTACCATGAATGTGCTGAAGATGCCAAGGCTGCTTGCAAACAACTCAGTACCTATATTGATTACAAGAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCTAACATGTCTGAAGGTTTTCGTGGCATTGTTCAGACAATGGGCCTTGGCAATCTCAAGCCAAACATCGTGGTGATGCGTTACCCAGAAATCTGGCGTCGGGAGAACTTGACAGAAATCCCGGCCACCTTTGTTGGTATAATTAATGATTGTATTGTTGCAAACAAGGCAGTAGTTATAATGAAGGGTCTTGATGAATGGCCAAATGAGTACCAGAAGCAATATGGTACTATAGATTTGTATTGGATTGTAAGAGATGGTGGTCTCATGCTTCTTCTCTCTCAATTGCTTCTTACCAAGGAGAGCTTCGAGAGTTGCAAGATTCAGGTTTTCTGTATTGCAGAAGAGGATGCAGATGCAGAGGGGCTGAAAGCTGATGTAAAAAAATTCCTTTACGATCTTCGGATGCAGGCAGAAGTCTTTGTCATAACAATGAAATGGGATGCATCAGTAGACCCAGGGTCTCCGCAAGATGAGTCATTAGATGCATTTACTAGTGCTAAGCAAAGAATTGGTGATTATTTAACCCAAATGAAGGCCTCAGCAGAGAGAGAAGGTACCCCTCTAATGGCGGATGGTAAGACTGTAGTTGTGAACGAGGCGCAGGTCGAGAAGTTTCTATACACGACGCTTAAACTCAACTCTATAATTTTGAGATACTCAAGAATGGCTGCTGTTGTGTTTGTAAGTCTGCCCCCACCTCCATTGAGCCACCCAGCATATTTCTATATGGAATACATGGATCTGTTACTGGAGAATATACCGAGGATTTTGCTTGTAAGAGGATATCGTAGAGACGTTGTAACTCTATTCACATAG 2985 0.4409 MSSNPEMGADDDVEAAGADGGFRSPIGRKYRPVLANDRAVLEMSSIDPGSSSSSSSVIPDPPPNLRKINVGSSLNASSDAKEGKSSHPPQPNGPQQDSKLELFGFDSLVNILGLKSMTGEQVAAPSSPRDGEDITIPAGLPKPPALRLGTMMGVFIPCLQSILGIIYYIRFSWIVGMGGIGGTLLLVALCGTCTFLTAISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFRETITQVNGTTIAQPIESPSSHDLQIYGIVVTIVLCFIVFGGVKMINRVAPAFLIPVLFSLICIYLGILLAREDHPAEGITGLSLETLKDNWGSEYQKTNDAGIPEPDGSVSWNFNALVGLFFPAVTGIMAGSNRSSSLKDTQRSIPLGTLAATLVTTFMYLVSVIMFGALATREKLLTDRLLTATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILKYFKVADGSEPHVATLFTAFLCSGCVVIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVIMFLISWSFTVVSLALASLIYKYVSLKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLVFCRPWGRLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKAACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIMKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDADAEGLKADVKKFLYDLRMQAEVFVITMKWDASVDPGSPQDESLDAFTSAKQRIGDYLTQMKASAEREGTPLMADGKTVVVNEAQVEKFLYTTLKLNSIILRYSRMAAVVFVSLPPPPLSHPAYFYMEYMDLLLENIPRILLVRGYRRDVVTLFT* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1888 994 TIGRFAM 2a30: K-Cl cotransporter 83 994 IPR004842 GO:0006811|GO:0015377|GO:0016021
Lja6g1888 994 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 21 993 IPR004842 GO:0006811|GO:0015377|GO:0016021
Lja6g1888 994 PANTHER CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1 21 993 - -
Lja6g1888 994 Pfam Amino acid permease 153 629 IPR004841 GO:0016020|GO:0055085
Lja6g1888 994 MobiDBLite consensus disorder prediction 68 97 - -
Lja6g1888 994 MobiDBLite consensus disorder prediction 45 60 - -
Lja6g1888 994 MobiDBLite consensus disorder prediction 44 99 - -
Lja6g1888 994 Gene3D Amino acid/polyamine transporter I 147 611 - -
Lja6g1888 994 MobiDBLite consensus disorder prediction 1 29 - -
Lja6g1888 994 Pfam Solute carrier family 12 663 784 IPR018491 GO:0006811|GO:0016020|GO:0022857
Lja6g1888 994 Pfam Solute carrier family 12 795 993 IPR018491 GO:0006811|GO:0016020|GO:0022857
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1888 148 994 Inorganic Solute Cotransporters AT1G30450 83.510 0.0 1452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1888 K14427 - gmx:100795205 1708.73