Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1871 ATGAGTTCTGGAAGCAGAGGGAACTTGAAGGACTCAAGCTTTACTAGTAACATGAACACCGCCACAACCAGCAACAAGGACAAGGCACTTGCTCAGTTCAGTGCAGATGCTGAGAATCTTGCAGAGTTTGAGCAATCTGGTGCCTCTGACAAATCATTTGACTACTCAAAAACAGTTCTTGATTCTCCCAGGTTAGTGTCTGAAGAGAAAATGACTGCATATTTGTCTAAAATCCAAAGGGGTGGTCTTATCCAATCCTTTGGTTGTATGCTAGCAATTGCAGAATCCACTTTTACAATCATTGGATACAGTGAGAATTGCTTTCAATTGTTAGGCTTAGAGAGGCATATTGATTCAAAACAGCAGCTTCTGGGTCTGATTGGGGTTGATGCCACAACCCTCTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGTCTTCCAGGGAAATTTCACTTTTGAACCCAATTTGGGTCTATACAAGGACAACCCAGAAGCCATTTTATGCTATACTCCACAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCAGCAAGGTCCAGTGACCCTGCATTATCACTTGCTGGGACAGTTCAATCACAGAAGCTGGCTGTTAGAGCAATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGTCTGCTTTGTGACGCGGTTGTTGAGGAAGTGCAGAAGTTTACTGGATATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGACCATGGTGAAGTTGTGTCTGAGATTAGGAGGTCAGATTTAGAGCCTTACTTGGGTTTGCATTATCCTGCCACAGATATCCCACAAGCTGCACGCTTCTTGTTCAAGCAGAACCGCGTAAGGATGATTTGTGATTGCCAAGCGAATGCGGTTAAGGTGATTCAGAGTGAAGATTTAATGCAACCTCTTTACTTGGTGAACTCAACCCTCAGGGCACCACAAGGTTGTCACTCACAGTACATGGCTAACATGGGCTCAATTGCTTCTCTGGTGATGGCTGTCATAGTCAATGGAAATGACACAACAAGGCTTTGGGGATTGCTGGTTTGTCATCACACTTCACCGCGCTATGTGCCTTTCCCAGTCCGTTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGCCTGCAGCTTTACATGGAGATTCAACTGGCAGCACAAATGGCAGAGAAGAGAATTCTTAAAACACAAACTTTGCTGTGTGACATGCTCCTGCGCGATGCACCGTTTGGGATTGTGACTCAATCCCCGAGTATCATGGACCTTGTGAAGTGTGATGGTGCTGCCTTGTACTATGATGGTAAGTGTTGGTTGTTAGGCACAACCCCAACTGAATCACAGGTGAAGGACATTGCAGAATGGCTACTTGTTAATCATGGAGACTCAACAGGTTTGAGCACAAATAGTTTGGCTGAGGCGGGTTATCCGGGCGCTACTTCGCTGGGGGATCCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAGACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAATGAAATGGGGAGGAGCCAAGCATCATCCAGAGGATAAGGATGATGGAGGGAAAATGAACCCAAGATCATCCTTTAAAGCTTTTCTTGAAATAGTCAAAAGAAAAAGTTTGCCTTGGGAAGTGTCAGAGATTAATGCTATTCACTCATTACAACTAATCATGAGAGATTCATTCCAAGACACACAGAATTTCGGTCCAACGACTCTAAATTTTATACAGAAAATTGGCACTGCAATTGAAAGGAAGGGTGAACTCAGTTCAGTAGCGTGTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCCATTTTTGGGGTTGATTCAGATGGCCTAATCAATGGATGGAATGTACAAACTTCTGAATTGACAGGTCTGCAGGCTAGTGAAGCTATAGGAAAATCCCTAGTAAATGAAGTAGTACACGCGGATTCGCGCGAAACTCTTACAAATGTCCTAAGCAGAGCCTTGCAAGGTGAGGAGGAAAAAAATGTTGAGTTGAAAATAAAACACTTTGGGATTGATCAAAAAAAAGTTGTTTATCTGAGGGCCAATGCCTGCACTAGTAGGGACTACACAAATGCCATTGTTGGGGTGTGCTTTGTAGGTCAAGACATAACTCACGAGAAAGTGGTTCTAGACAAGTTCATCAAGTTGGAAGGTGATTACAAAGCCATCATACAGAGTCTCAATCCATTAATTCCACCCATTTTCGCTTCTGATGAGAATGCATGCTGCTCTGAATGGAATGCAGCCATGGAAAAGCTAACTGGTTGGAAGAGAGAAGAAGTCATAGGAAAATTACTTCCTGGGGAGATCTTTGGGAACTTTTGTCAATTGAAAGGTCAAGATACACTCACTAACTTTATGATTTTACTGTATCGCGGACTAAGTGGTCAAGATTCCGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAAAATTTGTTGAGGTTTATATAACAGCAAGCAAGAGGAACGATGCGGCTGGGAATATGATAGGCTGTTTCTGCTTCTTGCAGATCGTGTCGCGAGATCCGAGCCAGCCCTCTGATGGACACAGGTCTGAAGGCAGAGAAAGCATTTATGAATCTAAGGAGTTAGCTTATATTCTACAAGAGATGAAGAACCCTTTGAACGGTTTAAGGTTCACACACAAACTTCTGGAAAACACGGCGGTCTCAGAAAATCAGAAACAATTTCTTGATACTAGTGATGCATGTGAAAGACAGATCATGGCAATTATTGAGAATTCAGATTTAGAAAGTATAAATGAAGGCACTTTGCAGCTAAACATGGAAGAATTTCTTCTGGGAAATATTTTAGATGCCATTGTGAGTCAAGTGATGATGTTGATAAAAGGAAAAAACTTGCAGCTGTTTCATGAAATTCCGGAGGAAATCAAAACACTTGCTCTATATGGTGATCAAATTAGGCTGCAGGTGGTGTTGTCTGATTTTTTGCTTAATGTAGTTAGCCACACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCCGGTTTGAAAATAATACAGGATGGCAATGAGTTTATCCATCTCAAGTTCAGAATGACCCATTCTGGTCAAGGTCTCCCTTCTGCTGTTCTTCATGATATGTTTGAAGGAGGGAATCAGTGGACTACACAGGAAGGTCTAGGGCTATATATGTCGAGGAAAATTCTCAGTAGGATGAATGGTCATGTCCAATATGTAAGAGAACAAAATAAGTGCTATTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCAAAGATAAGCATGTCAAGTTAG 3366 0.4236 MSSGSRGNLKDSSFTSNMNTATTSNKDKALAQFSADAENLAEFEQSGASDKSFDYSKTVLDSPRLVSEEKMTAYLSKIQRGGLIQSFGCMLAIAESTFTIIGYSENCFQLLGLERHIDSKQQLLGLIGVDATTLFTPPSGASLAKAVSSREISLLNPIWVYTRTTQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGTVQSQKLAVRAISRLQSLPGEDIGLLCDAVVEEVQKFTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCQANAVKVIQSEDLMQPLYLVNSTLRAPQGCHSQYMANMGSIASLVMAVIVNGNDTTRLWGLLVCHHTSPRYVPFPVRYACEFLMQAFGLQLYMEIQLAAQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGKCWLLGTTPTESQVKDIAEWLLVNHGDSTGLSTNSLAEAGYPGATSLGDPVCGMATARINSRHFLFWFRSHTAKEMKWGGAKHHPEDKDDGGKMNPRSSFKAFLEIVKRKSLPWEVSEINAIHSLQLIMRDSFQDTQNFGPTTLNFIQKIGTAIERKGELSSVACEMVRLIETATVPIFGVDSDGLINGWNVQTSELTGLQASEAIGKSLVNEVVHADSRETLTNVLSRALQGEEEKNVELKIKHFGIDQKKVVYLRANACTSRDYTNAIVGVCFVGQDITHEKVVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKREEVIGKLLPGEIFGNFCQLKGQDTLTNFMILLYRGLSGQDSEKLPFGFFDRNGKFVEVYITASKRNDAAGNMIGCFCFLQIVSRDPSQPSDGHRSEGRESIYESKELAYILQEMKNPLNGLRFTHKLLENTAVSENQKQFLDTSDACERQIMAIIENSDLESINEGTLQLNMEEFLLGNILDAIVSQVMMLIKGKNLQLFHEIPEEIKTLALYGDQIRLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGLPSAVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVQYVREQNKCYFLIDLELRTRKERQRNLQAKISMSS* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1871 1121 Gene3D - 395 568 IPR043150 -
Lja6g1871 1121 CDD HisKA 884 934 IPR003661 GO:0000155|GO:0007165
Lja6g1871 1121 Gene3D - 201 551 IPR029016 -
Lja6g1871 1121 TIGRFAM sensory_box: PAS domain S-box protein 612 726 IPR000014 -
Lja6g1871 1121 SUPERFAMILY GAF domain-like 398 577 - -
Lja6g1871 1121 CDD PAS 749 857 IPR000014 -
Lja6g1871 1121 Gene3D PAS domain 751 863 - -
Lja6g1871 1121 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g1871 1121 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 944 1103 IPR036890 -
Lja6g1871 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 854 IPR035965 -
Lja6g1871 1121 Pfam His Kinase A (phospho-acceptor) domain 883 943 IPR003661 GO:0000155|GO:0007165
Lja6g1871 1121 Pfam GAF domain 220 390 IPR003018 GO:0005515
Lja6g1871 1121 Gene3D - 921 1097 IPR036890 -
Lja6g1871 1121 Gene3D PAS domain 606 726 - -
Lja6g1871 1121 ProSiteProfiles PAS repeat profile. 738 783 IPR000014 -
Lja6g1871 1121 Gene3D PAS domain 77 323 - -
Lja6g1871 1121 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 380 IPR016132 -
Lja6g1871 1121 PIRSF Phytochrome_conventional 6 1112 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lja6g1871 1121 Pfam PAS fold 73 187 IPR013654 GO:0006355
Lja6g1871 1121 SUPERFAMILY GAF domain-like 200 386 - -
Lja6g1871 1121 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 991 1101 IPR003594 -
Lja6g1871 1121 ProSiteProfiles PAS repeat profile. 605 676 IPR000014 -
Lja6g1871 1121 SMART HKATPase_4 991 1105 IPR003594 -
Lja6g1871 1121 PRINTS Phytochrome signature 608 624 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 627 642 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 505 524 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 538 556 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 PRINTS Phytochrome signature 420 440 IPR001294 GO:0006355|GO:0009584
Lja6g1871 1121 ProSiteProfiles Histidine kinase domain profile. 886 1105 IPR005467 -
Lja6g1871 1121 SMART HisKA_10 879 943 IPR003661 GO:0000155|GO:0007165
Lja6g1871 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 611 718 IPR035965 -
Lja6g1871 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 189 IPR035965 -
Lja6g1871 1121 CDD HATPase_Phy-like 990 1103 IPR044767 -
Lja6g1871 1121 Pfam PAS fold 738 857 IPR013767 GO:0006355
Lja6g1871 1121 Pfam PAS fold 608 722 IPR013767 GO:0006355
Lja6g1871 1121 Pfam Phytochrome region 403 578 IPR013515 GO:0006355|GO:0009584
Lja6g1871 1121 SMART pas_2 607 674 IPR000014 -
Lja6g1871 1121 SMART pas_2 737 806 IPR000014 -
Lja6g1871 1121 SMART gaf_1 220 400 IPR003018 GO:0005515
Lja6g1871 1121 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 1110 - -
Lja6g1871 1121 CDD PAS 616 722 IPR000014 -
Lja6g1871 1121 PANTHER PHYTOCHROME E 22 1110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1871 Lja-Chr6 46005842 46010350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1871 12 1105 Histidine Kinase Gene Family AT4G18130 62.929 0.0 1456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1871 K12123 - gmx:100808192 1900.95