Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1870 ATGGGGCGTGCAAAAGTAATCTTGAAACCAATTGAAAAGGTGAATACTCGGAGATTAACTTTCAGTCAAAGAAAGAAGGGCCTTATGAAGAAAATTTCTGACTTTCACAAATTTTGTGGAAATGAAGCATGCTTGATTGTGTATGATGTTGATGGTAATGGTAAACCAGTGGTTTGGCCTGAGGAACCTTCAAGAGTACACTCAATCCTTGATAAGTATGAGCACCAAAGAAGTAAGAATGATAAACCTGCTCCTAAGACATTTGATCTGGAAAATTTCTTTGACCATAGGAAAGTGAAGGTTGAAGCTGAAATTGCTAGAGTGAAGAAGGAGTTTTTTAAGGTGAAATATCCAACTTGGGATCCATGTTTCAATGAGCTGACAATGGAGCAACTGAGTTTCTTCATGGCTAAGCTGAGTGCTAAGATTGAAGCTTGTGATCATAGGATTGATATGTTGAAGAAGGAGCGTCAAAGCGAAGCCGCCACAGCCGCCTCTGGTAGCGTGCAAAACATGGCTCAGGAGGGTGCTGAATCCTCAAATCCATGCCCTGTTGAAGTAAATGTGTCTCTAGATTCAATAGACCTACTTGATTATATGAATTGGGATGAACTGGAGCATCTGAATTTGTGTGATGTTTCTACTAACTATGAAAGTGATCTTTTTTGGGCCAACCAACTTGATGAGCTTATTTCTCAGAATACGGATGATCTTTTTACATGCTTCAAATGA 732 0.3948 MGRAKVILKPIEKVNTRRLTFSQRKKGLMKKISDFHKFCGNEACLIVYDVDGNGKPVVWPEEPSRVHSILDKYEHQRSKNDKPAPKTFDLENFFDHRKVKVEAEIARVKKEFFKVKYPTWDPCFNELTMEQLSFFMAKLSAKIEACDHRIDMLKKERQSEAATAASGSVQNMAQEGAESSNPCPVEVNVSLDSIDLLDYMNWDELEHLNLCDVSTNYESDLFWANQLDELISQNTDDLFTCFK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1870 243 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lja6g1870 243 PANTHER MADS BOX PROTEIN 3 204 - -
Lja6g1870 243 Coils Coil 136 156 - -
Lja6g1870 243 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Lja6g1870 243 CDD MADS_SRF_like 2 79 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja6g1870 243 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Lja6g1870 243 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Lja6g1870 243 PANTHER PROTEIN, PUTATIVE-RELATED 3 204 - -
Lja6g1870 243 MobiDBLite consensus disorder prediction 161 182 - -
Lja6g1870 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 58 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1870 Lja-Chr6 46004796 46005527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1870 1 149 Type I MADS-box Gene Family AT5G55690 31.169 1.60e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja6g1870 SRF-TF 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1870 - - ccaj:109809010 172.17