Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1869 ATGAAGCAGTCTTTTGATCCTACATCCTGGGGTCCTTCCAGGATTCCATCTATAAATGTACCTGGAAAACCAGGGCGTGGTCCATGGGGGGTTTTATCTGGATCTGATTCATACCATGCCTCATCTGATGCCAGCCTATTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAACTTAAATGACACTGAAAATAATTATCAATCTGTTGATGACATCTCATCCGGCTTTAAAAAGCTCCATCAAGATGTAGCGGTTAATGATTCCCTTGAAAATGGTGATAATGATGCAATCGGAACCATGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTAATCTAAGTGATTTGCCTGGTTCCCTCGAGGACTTGGAAGAGTATGACTTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCCCAGGAAACTCTCAGTGTCGGTATGTCAAATTTAAGCTTCTCTGATAGTTCTCTTGGCAATGGTTTGCCCAATTATTCTATCCCTAATGGTGTGGGAATTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACCTTATTTGTTCGAAATATTAACAGTAATGTTGAGGATTCGGAGCTAAAGGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTGTATACTGCATGTAAGCACCGGGGGTTTGTAATGATATCGTACTATGACATCCGTGCTGCTCGAACAGCTATGCGCTCATTACAAAACAAGCCTCTACGGCGCAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCTGACAAGGATGTCAACCAAGGAACCTTGGTAGTTTTCAACTTGGATCCATCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGAAGTGATATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGACCCAACTAAATCAAGATCCTGACCAAGATGAAACTCGGAGTTTCCGGTACCCAGTGGGTTCACCAATAGCCAGCTCTCCACCAGGTAATTGGTTCAACAGTCCTGTTGAGCAGAATTCAATGCCAACTATCAATCATTCTCCTGGTTCGAGGATTATGAGCCCAACAGCAGGCAATCATTTACGAGGATTAGCTTCGATTTTGCAACCACAAGTATCGAACACTGTGAAGGCTCCAACTAAGGACATAGGAAGGAATGTTCATGGAGCTACTTTTCAGTCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCATGGAGCTTTGCCCACTTTTGGTCCATCAACATCAAATGGATCTTCAATCGAAACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAAGCCTCCACTCAGAGCAATCCAAACCAACAGCTTGGTCAAGACCATCCGTGGGGCATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATTCTCAAGTCAGAATAGTTCATTTGTCAGTTCGTCCCAACCTCATCACCACCATCATGTTGGTTCTGCTCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTTCTTCCCGAGTCACCTGAAACTTCATTTGTGAGTAATGTTGGTTATGGAGGCATGAGTCTGGGGCACAATGATGGAAACTACTTAGTTAATGTGAGCGGGTCTGTTAATGCTGGCATTTCTATACCAAGAACTGTGTGTGACAGTGGTTCATCGAACTTCAGAATAAGATCTTCTCCTAGGCTTAGCCCTGTATTTTTGGGCAATGGTCCGTATCCAGGATTGTCACTTACTCCCAAGAAGAGTTTGGCTGACCGTGCTAGGAGTAGATGGATAGAGAACAGTGGAAGCCAAGTTGACAGCAAGAAGCAGTTTCAGCTTGACTTGGATAAGATTAAATGCGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAATAAATATACCTCCAAAATGTTATTAGCTGCCATTGACGAAAACCACAAGGGTACCTATGATTTCCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTTGCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAAGTCGCATCTTTGGCATATGCTCGAATCCAAGGAAAGTCTGCCCTTGTGAACCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGTTGCCGCCCTATTCTGTTCCATTCAGAGGGTTCTGAAACTGGTGATCAGTTCATACAAGAGCATCTACCTTCCATCTCCAACAATCTAAATATTCAGGCAGCTAGGCTGAGCGAGTTACATTCAAGTTTTACTCCTGGAAGCCCTCCAAAGGATGGTCCTCCTGTGAGTTTGGGTACAAATTAA 2538 0.4243 MKQSFDPTSWGPSRIPSINVPGKPGRGPWGVLSGSDSYHASSDASLFSSSLPVLPHEKLNLNDTENNYQSVDDISSGFKKLHQDVAVNDSLENGDNDAIGTMLPDDEEELLAGIMDDFNLSDLPGSLEDLEEYDFFGSGGGMELETDPQETLSVGMSNLSFSDSSLGNGLPNYSIPNGVGIVAGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSDKDVNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMTQLNQDPDQDETRSFRYPVGSPIASSPPGNWFNSPVEQNSMPTINHSPGSRIMSPTAGNHLRGLASILQPQVSNTVKAPTKDIGRNVHGATFQSHSLPEPKFSQYHGALPTFGPSTSNGSSIETLSGPQFLWGSPSLHSEQSKPTAWSRPSVGHPFTSNGKSHAFPFSSQNSSFVSSSQPHHHHHVGSAPSGLPFERHFGFLPESPETSFVSNVGYGGMSLGHNDGNYLVNVSGSVNAGISIPRTVCDSGSSNFRIRSSPRLSPVFLGNGPYPGLSLTPKKSLADRARSRWIENSGSQVDSKKQFQLDLDKIKCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVNHFQNSSLMNEDKRCRPILFHSEGSETGDQFIQEHLPSISNNLNIQAARLSELHSSFTPGSPPKDGPPVSLGTN* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1869 845 CDD RRM3_MEI2_like 682 767 IPR034454 -
Lja6g1869 845 MobiDBLite consensus disorder prediction 493 550 - -
Lja6g1869 845 MobiDBLite consensus disorder prediction 1 15 - -
Lja6g1869 845 Pfam RNA recognition motif 2 679 775 IPR007201 -
Lja6g1869 845 SUPERFAMILY RNA-binding domain, RBD 191 353 IPR035979 GO:0003676
Lja6g1869 845 Gene3D - 278 376 IPR012677 -
Lja6g1869 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Lja6g1869 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Lja6g1869 845 Gene3D - 183 277 IPR012677 -
Lja6g1869 845 CDD RRM2_MEI2_like 278 348 - -
Lja6g1869 845 MobiDBLite consensus disorder prediction 493 544 - -
Lja6g1869 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Lja6g1869 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Lja6g1869 845 MobiDBLite consensus disorder prediction 825 845 - -
Lja6g1869 845 MobiDBLite consensus disorder prediction 1 31 - -
Lja6g1869 845 PANTHER PROTEIN MEI2-LIKE 2 2 836 - -
Lja6g1869 845 MobiDBLite consensus disorder prediction 347 372 - -
Lja6g1869 845 SUPERFAMILY RNA-binding domain, RBD 681 765 IPR035979 GO:0003676
Lja6g1869 845 CDD RRM1_MEI2_like 193 269 IPR034453 -
Lja6g1869 845 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 836 - -
Lja6g1869 845 SMART rrm1_1 280 348 IPR000504 GO:0003723
Lja6g1869 845 SMART rrm1_1 195 263 IPR000504 GO:0003723
Lja6g1869 845 SMART rrm1_1 681 757 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1869 Lja-Chr6 45995854 46002686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1869 189 395 Eukaryotic Initiation Factors Gene Family AT1G71770 26.271 2.01e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1869 - - lja:Lj6g3v1093480.1 1687.55