Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1859 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAATAAGTGGTGAAGATAGTGCAAATCAGAGCAAGGTTGGAGATAGAAGCCCAAAAGCATATGATAGTGATACCTTGGTATTTATATCCATGGCTCAAGAGTTGAAGGATGAAGGGAACAAGCTGTTCCAAAAGCGCGATCTTCAAGGAGCAATGGTAAAATATGAGAAAGCCCTCAAATTGCTTCCTGGAAATCACATAGATGTGTCCTATCTGCGGAGTAACATGGCTGCGTGCTACATGCAGATGGGGCTCAGTGAGTACCCTAGGGCAATTCATGAATGCAATTTGGCTCTTGAAGTGACACCAAAGTACAGTAAAGCTCTGATGAAGAGGTCGAGGTGCTACGAGGCTTTAAACAGGCTGGATTTAGCACTGAGAGATGTTAGTGCTGTTCTGAAGATGGAGCCAAATAATGTCATGGCTTTGGAGATCTCAGATAAGGTGAAAAGTGCACTTGAAGATAAAGGATTAAGAGTGAATGATACAGAAATTGAGTTGCCTCCTGATTATGTTGAACCTCCTATTGCTTTGCCTCCCAAAAAGGTAGTAAAAGAAAAGACACACAAGAAAAGGCACAACAAAGAGAAGGTGAAGGATCTGGATAAAATTGTAGAAAAGCAAACTGAGGAGAAATTAGAAGAGAAAAATGCTGAGGACAGTGTTGCAGTAAAGAAGGAAGAGGATGGTCTGAAAGGGAAGAAGGCTAACACATCTAAAAAGAAGAAGACCAAGGAAAAAGTTGATAAGAAAAAGGATGATGTTAAAGAGGTCTATGAGGTAAAATGTAATGGTAGAAGTGAAGATGTGCCTAAGAAAGCAGTCAAACTTGTTTTTGGTGAGGATATAAGATGTGCTGAATTGCCAGTTGATTGCAGCTTATTTCAGCTAAGAGAAGTTATTCGTGATCGGTTCCCAAGCCTAGGAGCAGTTCTTGTCAAATATCGAGACCAGGAAGGTGATTTGGTCACAATCACTTCTGAAGAAGAACTAAGGTGGGCTGAAACAGGATCACCGGGTTCTATCCGACTGTACATAGTAGAAGCTAATCCTGATCATGATCCACTCTATGAGAAACTTCATGTGAGGGATGGGGAAAAGGATGGTATTTATGATTCTCCTGAGAATGGTCATGTGGTGAAAGCAAAGGAAATTATCACCTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCACAACTATTCAAGAACCATGTTGGATTTGAATCTGACAGATATTTAGATTTTCATGAACTTGGGATGAAGCTTTATTCTGAGGCGGTGGAAGAGACAGTTACGAGTGAAGAGGCACAAGGTCTATTTGACATGGCTGGGGGCAAGTTTCAAGAGATGGCAGCTCTAGCTCTGTTTAACTGGGGAAATGTGCATATGTCCAGGGCAAGGAAGAGAGTGTATTTAACAGAAGATTTTTCAAAAGAGCATCTTTGTGAACAAATCAGAAGTTCATATGAATGGGCACAGAAAGAATATGCAAAAGCTGGAGAAAGATATGAAGCATCCACTAAAATCAAGTCAGATTTTTATGAAGGCTTTCTCGCACTAGGCCAACAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCACTCAGTAGTAATGTAGATTTAGCCACATGGCCCTCCACCGAGGTTCTTCATCTTTACAACAGTGCTGAGGAAAATATGGACAAAGGAATGCTGATATGGGAAGAATCAGAAGAACAAAGGTTGAGTGAAACCTCCAATCAAAGCGATATTAGATCACATTTGCAGAACATGGGGTTGGGTGGACTATTTAAAAACATGTCATCAGATGAAATTGCTGCACTGGCGGCCAACATGAGGTCCCAAATAAATCTCATGTGGGGAACCATGCTATATGAGCGCTCAATTGTGGAGTTCAAATTAGGTTTACCGGTATGGCATGAATGCCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATGTAGCAGTAATGTTGAAAAACCACTGTTCAAATAACACTTCCGGAGATGGTCTAGGTTTCCACATTGATGAAATAGTGCAGGCGTGGAATGAGATGTATGAAGCTAAAAAGTTGCACAAAGGAGTTCCATCATTTCGTTTGGAGCCCTTGTTTCGAAGAAGAGTTTCAAAGATTTACCATGCTTTTGAGCTTGTATAA 2208 0.409 MGKKKKQVGEISGEDSANQSKVGDRSPKAYDSDTLVFISMAQELKDEGNKLFQKRDLQGAMVKYEKALKLLPGNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALMKRSRCYEALNRLDLALRDVSAVLKMEPNNVMALEISDKVKSALEDKGLRVNDTEIELPPDYVEPPIALPPKKVVKEKTHKKRHNKEKVKDLDKIVEKQTEEKLEEKNAEDSVAVKKEEDGLKGKKANTSKKKKTKEKVDKKKDDVKEVYEVKCNGRSEDVPKKAVKLVFGEDIRCAELPVDCSLFQLREVIRDRFPSLGAVLVKYRDQEGDLVTITSEEELRWAETGSPGSIRLYIVEANPDHDPLYEKLHVRDGEKDGIYDSPENGHVVKAKEIITSSCIEDWIIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEEAQGLFDMAGGKFQEMAALALFNWGNVHMSRARKRVYLTEDFSKEHLCEQIRSSYEWAQKEYAKAGERYEASTKIKSDFYEGFLALGQQQFEQAKLSWYYALSSNVDLATWPSTEVLHLYNSAEENMDKGMLIWEESEEQRLSETSNQSDIRSHLQNMGLGGLFKNMSSDEIAALAANMRSQINLMWGTMLYERSIVEFKLGLPVWHECLEVAVEKFELAGASPTDVAVMLKNHCSNNTSGDGLGFHIDEIVQAWNEMYEAKKLHKGVPSFRLEPLFRRRVSKIYHAFELV* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1859 735 Pfam PB1 domain 283 355 IPR000270 GO:0005515
Lja6g1859 735 MobiDBLite consensus disorder prediction 204 244 - -
Lja6g1859 735 Gene3D Tetratricopeptide repeat domain 38 169 IPR011990 GO:0005515
Lja6g1859 735 Gene3D - 281 345 - -
Lja6g1859 735 SUPERFAMILY CAD & PB1 domains 282 367 - -
Lja6g1859 735 MobiDBLite consensus disorder prediction 1 28 - -
Lja6g1859 735 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Lja6g1859 735 ProSiteProfiles PB1 domain profile. 281 358 IPR000270 GO:0005515
Lja6g1859 735 SMART PB1_new 281 358 IPR000270 GO:0005515
Lja6g1859 735 MobiDBLite consensus disorder prediction 178 258 - -
Lja6g1859 735 CDD PB1 284 355 - -
Lja6g1859 735 PANTHER PROTEIN PHOX3 3 734 - -
Lja6g1859 735 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Lja6g1859 735 PANTHER PROTEIN CLMP1 3 734 IPR044517 -
Lja6g1859 735 SMART tpr_5 41 74 IPR019734 GO:0005515
Lja6g1859 735 SMART tpr_5 115 148 IPR019734 GO:0005515
Lja6g1859 735 SMART tpr_5 79 114 IPR019734 GO:0005515
Lja6g1859 735 SUPERFAMILY TPR-like 40 153 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1859 Lja-Chr6 45927300 45931631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1859 24 148 Calmodulin-binding Proteins AT3G25230 31.655 4.28e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1859 6 45927300 45931631 Lja6g1859 6 45927300 45931631 ECH
Lja4g1855 4 18169719 18183054 Lja6g1859 6 45927300 45931631 PCT