Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1848 ATGGCCATGTCTGTTGCTTCTTCTTCTTCTCAATTTCTCCGACCTCTTCATCAGCTAGAGTTCCCGAAATGCCCTCGCCTTTCTTCTAAATCCCAGTTCCGCCCTCGCCCCCTCCGCCGCTTCCAAACCCTCCGGAACAACATTCGCGCCACCGCCGCCGCCGCTCGTGTTGCTGATTCGGAATTCAGTTCAAAGCATGATCAGGCTGTAGCGGCGGACGTCTTGGCGTGCCCAATATGTTATGAGCCATTGATAAGAAAAGGTCCTGCTGGCCTTAGCTTATCAGCAGTCTACAGGTCTGGTTTCAAGTGTGAGAAGTGTAAAAAATCATATTCTAGCAGAGATAGGTATCTGGATTTGACTGTAACTGCTGGCTTGAGAGATTACACTGAAATTCCACCAATTCAGACTCAGCTTTTCAGGAGTCCCCTTGTTTCATTCTTATATGAGCGAGGTTGGCGTCAGAATTTCAGTCGAAGTGGCTTTCCTGGTCCGGATGAAGAGTTCAAAATGGCTCAAGAATACTTTGAACCTGCTAAAGGTGGTCTTATTGTGGATGTTAGCTGTGGTAGCGGTTTATTTTCCCGAAAATTCGCCAAATCAAAAAACTACTCTGGAGTCATTGCACTAGATTTTTCTGAAAATATGCTTCGCCAGAGTTATGATTTCATTAAGAAAGATGACACACTTTCAACCACTAATCTTGCACTTGTAAGGGCGGATGTTTCTAGGCTTCCCTTTTCATCAGGTTCAGTTGATGCAGTCCATGCTGGTGCAGCTTTACATTGCTGGCCATCTCCCTCCAATGCTGTTGCTGAAATCACCCGGGTACTAAGAAGCGGTGGAGTATTTGTTGGAACCACTTTTCTGCGTTACAATTCGTCAACTCCCTGGCTTGTACGCCTCTTCAGAGAGAGGACTTTTCCAGGCTATGGCTATTTATCAGCGGAAGAAATTGAAGACCTTTGCACCTCATGTGGTCTAACCAACTACTCATGCAAAATTCAGCAGTCTTTCATTATGTTCACAGCTCAGAAGCCTTAA 1044 0.4579 MAMSVASSSSQFLRPLHQLEFPKCPRLSSKSQFRPRPLRRFQTLRNNIRATAAAARVADSEFSSKHDQAVAADVLACPICYEPLIRKGPAGLSLSAVYRSGFKCEKCKKSYSSRDRYLDLTVTAGLRDYTEIPPIQTQLFRSPLVSFLYERGWRQNFSRSGFPGPDEEFKMAQEYFEPAKGGLIVDVSCGSGLFSRKFAKSKNYSGVIALDFSENMLRQSYDFIKKDDTLSTTNLALVRADVSRLPFSSGSVDAVHAGAALHCWPSPSNAVAEITRVLRSGGVFVGTTFLRYNSSTPWLVRLFRERTFPGYGYLSAEEIEDLCTSCGLTNYSCKIQQSFIMFTAQKP* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1848 347 Gene3D Vaccinia Virus protein VP39 140 345 IPR029063 -
Lja6g1848 347 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 148 346 IPR029063 -
Lja6g1848 347 CDD AdoMet_MTases 184 290 - -
Lja6g1848 347 PANTHER METHYLTRANSFERASE-LIKE 45 345 - -
Lja6g1848 347 PANTHER METHYLTRANSFERASE 45 345 - -
Lja6g1848 347 Pfam Methyltransferase domain 185 285 IPR013216 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1848 Lja-Chr6 45825016 45828419 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g1848 Methyltransf_11 1.3e-19 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1848 - - gmx:100812067 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1848 6 45825016 45828419 Lja6g1848 6 45825016 45828419 ECH