Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1846 ATGTGTGTGCAAGATGCAGAGCAAGTTGCCCCTGCAGATATGGATAACATGGGGAACACCAAGAACTCATGGCCTTTGTATCCTGAGATTTTTATTACTACCCAGATGGAGAACTGGGAAAAAGGACCCTCTTTGAGACCTTCAATTCAAAGTTCTTTTCCTCTGGAAAGCATATGTGAGGACACAGTGATTGCAGATAAGAAACAGAACATGGTGAATTTTATACCTGCTCTTCGGTCTGGAGTGTGGTCTGATATTGGAGACCGCCCTTACATGGAAGATACCCACATATGCATTAAAGATTTGGCAAAGCAGTTTAATTTTGATAAACAATCTAAGGAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTCGTCCGTGATCATCTGCCAAGACTTATTGTTGAGGATGTTAACTTCCCTTTGGAGCTAGAGAAGGTGGTCAAAAGGTCATTTATGGAGACTGATGCTGCATTTTTAAAAGTATCTTCTCATGAGTCTTCCCTTTCTTCTGGTACAACTGCTCTAACTGCAATCATATTTGGAAGGTCATTACTTGTAGCCAATGCTGGAGACTGCAGGGCTGTAATGTCCCGTCGAGGAAAGGTGATAGAAATGTCCAAAGATCATAGGCCAAACTGCATTAAAGAAAGAATGCGGATCGAGTCCCTGGGTGGATTCATTGATGACGGTTACCTGAATGGTCAGTTAGGTGTCAGTCGTGCTCTAGGTGATTGGCACCTTGAAGGAATGAAAGAAATGAGTGAAAGAGGTGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGGGTTTGGGATGTTTTTAGCAGCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTACAAGAGCACAATGATGAGAAACTGTGCTGCAAGGAAATAGTGCAGGAAGCAATCAAGAGAAGATCAACAGACAACTTGACTGTTCTGATGGTGTGTTTTAACTCAGAACCGCCACCAGCTGTGGCTGTGGATAGAATAAGGGTAAGGAGAAGCATATCCGCAGAGGGACTTCAGAATCTTAAATGTCTGCTAGAAGGGTAG 1134 0.4277 MCVQDAEQVAPADMDNMGNTKNSWPLYPEIFITTQMENWEKGPSLRPSIQSSFPLESICEDTVIADKKQNMVNFIPALRSGVWSDIGDRPYMEDTHICIKDLAKQFNFDKQSKEAVSFYGVFDGHGGKSAAQFVRDHLPRLIVEDVNFPLELEKVVKRSFMETDAAFLKVSSHESSLSSGTTALTAIIFGRSLLVANAGDCRAVMSRRGKVIEMSKDHRPNCIKERMRIESLGGFIDDGYLNGQLGVSRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGVWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAIKRRSTDNLTVLMVCFNSEPPPAVAVDRIRVRRSISAEGLQNLKCLLEG* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1846 377 Pfam Protein phosphatase 2C 91 336 IPR001932 -
Lja6g1846 377 SUPERFAMILY PP2C-like 71 346 IPR036457 -
Lja6g1846 377 PANTHER PROTEIN PHOSPHATASE 2C 1 365 IPR015655 GO:0004722|GO:0006470
Lja6g1846 377 ProSiteProfiles PPM-type phosphatase domain profile. 79 344 IPR001932 -
Lja6g1846 377 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 365 - -
Lja6g1846 377 SMART PP2C_SIG_2 94 344 IPR001932 -
Lja6g1846 377 SMART PP2C_4 69 342 IPR001932 -
Lja6g1846 377 CDD PP2Cc 79 344 IPR001932 -
Lja6g1846 377 Gene3D - 61 348 IPR036457 -
Lja6g1846 377 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1846 Lja-Chr6 45800677 45803560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1846 68 377 PP2C-type Phosphatase Gene Family AT2G25620 59.295 5.70e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lja6g1846 PP2C 3.1e-70 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1846 K14803 - gmx:100813157 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1846 6 45800677 45803560 Lja6g1846 6 45800677 45803560 ECH
Lja4g1841 4 18005089 18008702 Lja6g1846 6 45800677 45803560 PCT