Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1842 ATGGCAGGAATGCTTCCGGGAGTTGAATCAGCTAGAAGGAGAAGGTTCCATAAAAGTGGAGGGTGCTTGGATGGACCACTGTTGGCTCCTCATAACTCCACTAGGCGCTCTTCGTTCTGTTTGTATGCAAGTAACCATGAATCTCGCATTTCCTCATCTTCTTCCCTGCAAAGAGGCTTGCTATACCAGGCACACCTTGATGAGAGTTTGGGGGGAGCAGCAAGAGAAGCTAAACATAGATTGGATGACAAGTTCAGAGCACAAAGGGTATCTGAAACCAATAGTGTGGAGGAGAGAAGAAGAAGCTTAGGAGAGTTGGGGACAGAGACATATGGGTCAAGGAAAAGTGGTTCAAGGAGGTTCAGTTGGAGCAAATTGAGCTGGAAGGCCTCAGAGCAAGAGGATTGTGCAGTGTGTTTGGAAACAATCAGGAATGGGGAGACACTGATTCCTCTTCCTTGTGCCCACAGGTTCCATTCCAGATGCTTGAAGCCTTGGTTGGAAAATAATTCACACTGTCCATGCTGCAGAACCACCATTCTTTCCCTCTAG 552 0.4746 MAGMLPGVESARRRRFHKSGGCLDGPLLAPHNSTRRSSFCLYASNHESRISSSSSLQRGLLYQAHLDESLGGAAREAKHRLDDKFRAQRVSETNSVEERRRSLGELGTETYGSRKSGSRRFSWSKLSWKASEQEDCAVCLETIRNGETLIPLPCAHRFHSRCLKPWLENNSHCPCCRTTILSL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1842 183 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 106 - -
Lja6g1842 183 Pfam Ring finger domain 135 177 IPR001841 -
Lja6g1842 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 182 IPR013083 -
Lja6g1842 183 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Lja6g1842 183 SUPERFAMILY RING/U-box 123 181 - -
Lja6g1842 183 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 113 179 - -
Lja6g1842 183 SMART ring_2 136 176 IPR001841 -
Lja6g1842 183 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 106 - -
Lja6g1842 183 CDD RING-H2_PA-TM-RING 135 177 - -
Lja6g1842 183 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 113 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1842 Lja-Chr6 45772135 45773505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1842 1 86 C3H Transcription Factor Family AT2G15580 48.421 1.16e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1842 - - gmx:100527583 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1842 6 45772135 45773505 Lja6g1842 6 45772135 45773505 ECH