Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1841 ATGGCGTTAGATCTAAATTCCAACTCTAATGATATGCGGCAACCACCCCGAAGTGTGCCGGAAGAGCCGCTCGTTTTGCCGCCGAGTACCGCGGCGGTGAATGGGGCTAACGGTTTGGTGCCTGTTTTCTACACTGCGACTGTCTCTGATGCTAGCTTGGTTGGCATGGGGTATGGAAATGTGGCGAATTCTGCTGCTGCTGCTGCTGCTGCCTGGTGTGTTCGCCCTGCTGTGCCGGTTCGTAATCCTACTATGAACCCCGCGGTTGGGTTCAGTCAATTTCCTAGTTTTTCAAATCGGGTTGCTGGTGGCAATGCTGTTGATTTTTCGGGTAGCTTTGTGGCGGCTGCTCATGGGTTTCCTCTGAATCTGGGTAACTGGGTTGCAGGTAATGCCTTGGATAGTAGTACTAGTAATACCCTGCAGGGCAATTGCAGGTTCGTTGGCAATGCTAGTGATCATGCTGGCGGCGCTGGGTTGGCTGGGGTTGGCTCGAATTCCACTGCGAGCCAGCGGGCTGATCAGCCGAGTGAGGAGGGTGGCGGGGATGACTCTGTGTCGGGGCGGAAGTTGAAGTTTATGTGTAGTTATGGTGGGAAGATTTTGCCCAGACCTAGTGATGGAACGTTGAGATATGTTGGAGGGCAGACGAGGATTATCAGTGTTAAGAAAGATGTGAGCTTTAATGATTTAGTGCGAAAGATGGTGGATACTTTTGGGCAGCCTGTGGTTATCAAATATCAGCTCCCTGATGAGGAACTTGATGCATTGGTCTCGGTTTCCTGCCCTGAGGATCTGGAGAATATGATGGAGGAGTATGAAAGGTTAATTGAGAGGTGTCCTGATGGTTCTCCTAAATTAAGGGTGTTTCTATTTTCTGCTTCAGAAATTGATCCTTCTGGTGTGGTACAGTTTGTAAATTTACAAGATAGTGGGCAGAGGTATGTTGAAGCTGTGAATGGAATTACCGATGGGATTAGTAGTAAACTCACTAGGAAAGCAAGTATTACAAGTGCAGCTTCTACACAGAATTCTGATTTGAGTGGAATTGAGGCTCTTGATAGCTCATATACTGCCCAAGGGGATGTCAGTGGGGCACCTTTGTCTAGTGCTTTATCACCTGAGGGGAATATCACCACCTCTCACGATGCTACTGCAAATCTTGTGGTTCCTGAGCCTGCTGCGTCAACTTACTCAGATGCTTCTGCGGCTTCATTGGGCACACCAGTGACTAATTCTGCTCCAACTCACAATCCACCTTTCCAGAATGAGCTTGAGTTAAAAAAGTCTGTACCTATTACTTTATCCCAGCAGCAATTTGGGCTGCAGCAGTCTGGAATGGAAATTCCTCCGCTTGCACCTCTGCAGCCTTTTGTTGATCATCGACCAGAAGTTATGAACCATGCAGATTATTTCCAGCTGCCTTTCCATACGGGATTCCAAAATCCTCAGCTCTTAGGTAAGTCTGGGTCTATCTACCCCCAACATCATTTTCATGGTAGTAGTCCTCGTTTAGCATCCCATCAGGCAATCCCTGCTGTGCAAATGACAATGGCTCAGCTGTCATCTCATGCTGGTATTAGACCGAGTGTCATTCAGCCACAGCCATTTATACAACTGCAGCAAAACCTTATGGACCAATATAATGATGAAAATACTTCAGGGCCAAGGATTCACCAGCCTCCTTGTGAAAAAAGTTACAATGCATATCCAGTTCAAGTCCCTTACGGAGGTAATTATGGTTGGATTCAGGTTTCTCTGCCAGAGCATGTTATTTACCCTGATGCAGTATTACCTAGACAACAGGTAATGATCCCTGAGAAAGTCCAAAGAATAGAGGACTGTTATTTGTGTCAGAAAAAACTGCCTCATGCCCATTCAGATCCAGTGGTTCAGGATCAGCATAATAATAGCTGCGCAGGTCAGATTCCCAATTCAATCCCAAGTTACCACAGTCTACATGTGGAGGACAATTCAACAGCTCAAGCAACAAGTAGGGTTTTGGTAACTGCACCATTGAAGGAAGGAAGTGTTGAACAAGCAGTTGGGACCAGACCCAGGGTCATCAGTAAATTGGAACCCCCAGGTGTAGTGCCTTGTACTGAAACAACTGGACTTCCTATAGAGCCTGAAGGTGAGAGGATTATTATGCTGGAAAGGTCTGATCATCCCAAAAATGCTGTAGTTATCCCGGAAGCAGTTGGAAGAACTGGTGAAATACAGTCAACTAGGGACGGGCTGACGGGAACAGCGGCACCTTTGTCTGATATTGTCCGCCAGCATGGAGCGCCAGTTGAAAACTGGGCTAAAGAGGAAGTGGTTGTGAATAAACCTGTTAATAATGATATACCTTTTTTTTGCACATCTTCTGAAACTTCCAAGTGCATGGTTCAAGAATCTCCAACAGAGTATACTGATAAAGTTGCTAGCACTCTTTCAAAAACAGATGCTGTGGATAATTGGATTGCACAAGATCTTCTCAAACCTATCGATGGAAGGATGGACACTCTCAAGAGAGGGAATCCTGAAATTTTTGTAAATAATGATAACCCTCAGCATGCTGTAGAGAAGACAGGGGCAGCTTTAGATAACAACCTTGGCAGGTCAAAATTGATCACTGATGCTCCAAATCAAATTAAGATGATGGAAGTTCTTCCTAGTTCTACTGTAGAAATTTCATATGGGAATAATTCCATGCCAGTGGAATATAATGAGGTTGCACAACCAGCTGTTTGGGGCATTATTGGATCAAATCCTCAATCCAAGAATGGAAACCATCACAAGGATGACATGCAGGATTCTTCAAACTCACTTTTTAGTAATCAGGATCCCTGGAATATACGTGGCACCTACTTTCCACCACCAAGACCTAACAAAGTCGCATCAAAGAAAGAAACTTATTCTCATAAGGATCAGTTTGGTGAGAATACAGGGAACACTGGGGAACAAAATTTAGAAGCTCAATTGGATGATGGCCTCTACCGAACATTCAATCAGAATTCAACTTTAGAAGAAGCTCGATGTGTCAAGGTCTCACCAGAAGAGCAGCAACTTCAAGCTGTTGCTGAAGGTTTAGCTGCTTCTGTTCTACACTCGAGCAGTTCTTCAAATCTTGACTTGCATGCCAGAGATGCATCCCATCATGAAGACAACAATGATGGAGATGTTCAAAATAATCTAATAGATATGCAGTGTAATGATAAAGCTCAGGATGTCAGAAGCAAGATCCCAGAAAAGGCAAACTTTGGCTTCCAAGCATCAGATGTTGGAGCACTGCAGGTTGAATGTTTTCTGCCGTATCATGTTATAAAGAATGGTGACCTTGAAGAACTGATAGAATTGGGTTCTGGGACCTTTGGGACTGTATATCATGGAAAATGGAGGGGTACTGATGTAGCAATAAAGCGGATTAACGATAGGTGTTTCGCTGGAAAGCCTTCAGAGCAAGAGCGCTTGAGAGCTGACTTTTGGAATGAGGCAATCAAGCTGGCGGACTTGCACCATCCAAATGTGGTAGCTTTCTATGGTGTTGTGCTTGATGGCCCCGGAGGCTCTGTGGCAACAGTAACAGAGTACATGGTTAATGGTTCTCTGAGAAATGCCTTGCAGAAGAATGGGAGGAACCTTGACAAGCGCAAGCGTCTTCTAATTGCAATGGATGTGGCCTTTGGTATGGAGTACCTGCATGGGAAAAACATAGTGCACTTCGACTTGAAAAGTGACAACTTGCTTGTGAATCTTCGAGATCCACATCGCCCAATATGCAAGGTTGGTGACTTGGGTCTGTCCAAAGTGAAATGCCAGACTCTAATATCTGGTGGCGTGAGAGGAACTCTACCTTGGATGGCCCCAGAACTGCTGAATGGGAGCAGTAGCCTTGTTTCAGAGAAGGTTGATGTATTTTCATTTGGCATTGTCATGTGGGAACTCCTGACAGGAGAAGAACCTTATGCTGATTTACACTATGGAGCCATAATAGGTGGTATCGTGAACAACACTTTGCGGCCTCCAGTTCCAGAATCTTGTGACCCAGATTGGAAAGTGCTGATGGAGAAGTGCTGGTCATCAGAGCCATCAGAAAGACCAACCTTCACTGAGATTGCCAGTGAATTACGTTCCATCGGAAGCAAGATCTCTCCCAAAGGACAGAATCAACAGCAGCAACCTGCTTCATCTCAGAGTCAAGTGCAGAAATAA 4197 0.4527 MALDLNSNSNDMRQPPRSVPEEPLVLPPSTAAVNGANGLVPVFYTATVSDASLVGMGYGNVANSAAAAAAAWCVRPAVPVRNPTMNPAVGFSQFPSFSNRVAGGNAVDFSGSFVAAAHGFPLNLGNWVAGNALDSSTSNTLQGNCRFVGNASDHAGGAGLAGVGSNSTASQRADQPSEEGGGDDSVSGRKLKFMCSYGGKILPRPSDGTLRYVGGQTRIISVKKDVSFNDLVRKMVDTFGQPVVIKYQLPDEELDALVSVSCPEDLENMMEEYERLIERCPDGSPKLRVFLFSASEIDPSGVVQFVNLQDSGQRYVEAVNGITDGISSKLTRKASITSAASTQNSDLSGIEALDSSYTAQGDVSGAPLSSALSPEGNITTSHDATANLVVPEPAASTYSDASAASLGTPVTNSAPTHNPPFQNELELKKSVPITLSQQQFGLQQSGMEIPPLAPLQPFVDHRPEVMNHADYFQLPFHTGFQNPQLLGKSGSIYPQHHFHGSSPRLASHQAIPAVQMTMAQLSSHAGIRPSVIQPQPFIQLQQNLMDQYNDENTSGPRIHQPPCEKSYNAYPVQVPYGGNYGWIQVSLPEHVIYPDAVLPRQQVMIPEKVQRIEDCYLCQKKLPHAHSDPVVQDQHNNSCAGQIPNSIPSYHSLHVEDNSTAQATSRVLVTAPLKEGSVEQAVGTRPRVISKLEPPGVVPCTETTGLPIEPEGERIIMLERSDHPKNAVVIPEAVGRTGEIQSTRDGLTGTAAPLSDIVRQHGAPVENWAKEEVVVNKPVNNDIPFFCTSSETSKCMVQESPTEYTDKVASTLSKTDAVDNWIAQDLLKPIDGRMDTLKRGNPEIFVNNDNPQHAVEKTGAALDNNLGRSKLITDAPNQIKMMEVLPSSTVEISYGNNSMPVEYNEVAQPAVWGIIGSNPQSKNGNHHKDDMQDSSNSLFSNQDPWNIRGTYFPPPRPNKVASKKETYSHKDQFGENTGNTGEQNLEAQLDDGLYRTFNQNSTLEEARCVKVSPEEQQLQAVAEGLAASVLHSSSSSNLDLHARDASHHEDNNDGDVQNNLIDMQCNDKAQDVRSKIPEKANFGFQASDVGALQVECFLPYHVIKNGDLEELIELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQERLRADFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKNGRNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVNNTLRPPVPESCDPDWKVLMEKCWSSEPSERPTFTEIASELRSIGSKISPKGQNQQQQPASSQSQVQK* 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1841 1398 MobiDBLite consensus disorder prediction 400 422 - -
Lja6g1841 1398 Gene3D - 211 294 - -
Lja6g1841 1398 SMART serkin_6 1108 1374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1841 1398 PRINTS Tyrosine kinase catalytic domain signature 1298 1320 IPR001245 GO:0004672|GO:0006468
Lja6g1841 1398 PRINTS Tyrosine kinase catalytic domain signature 1227 1245 IPR001245 GO:0004672|GO:0006468
Lja6g1841 1398 PRINTS Tyrosine kinase catalytic domain signature 1342 1364 IPR001245 GO:0004672|GO:0006468
Lja6g1841 1398 PRINTS Tyrosine kinase catalytic domain signature 1190 1203 IPR001245 GO:0004672|GO:0006468
Lja6g1841 1398 Pfam Protein tyrosine and serine/threonine kinase 1113 1371 IPR001245 GO:0004672|GO:0006468
Lja6g1841 1398 SUPERFAMILY CAD & PB1 domains 206 297 - -
Lja6g1841 1398 MobiDBLite consensus disorder prediction 1 15 - -
Lja6g1841 1398 MobiDBLite consensus disorder prediction 159 187 - -
Lja6g1841 1398 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 147 908 - -
Lja6g1841 1398 MobiDBLite consensus disorder prediction 400 420 - -
Lja6g1841 1398 SUPERFAMILY Protein kinase-like (PK-like) 1098 1369 IPR011009 -
Lja6g1841 1398 Gene3D Phosphorylase Kinase; domain 1 1101 1195 - -
Lja6g1841 1398 Pfam PB1 domain 210 292 IPR000270 GO:0005515
Lja6g1841 1398 CDD PB1_UP2 194 292 - -
Lja6g1841 1398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1233 1245 IPR008271 GO:0004672|GO:0006468
Lja6g1841 1398 PANTHER SERINE-THREONINE PROTEIN KINASE 926 1378 - -
Lja6g1841 1398 MobiDBLite consensus disorder prediction 917 964 - -
Lja6g1841 1398 Gene3D Transferase(Phosphotransferase) domain 1 1196 1398 - -
Lja6g1841 1398 PANTHER SERINE-THREONINE PROTEIN KINASE 147 908 - -
Lja6g1841 1398 CDD STKc_MAP3K-like 1114 1371 - -
Lja6g1841 1398 MobiDBLite consensus disorder prediction 1375 1398 - -
Lja6g1841 1398 MobiDBLite consensus disorder prediction 1 24 - -
Lja6g1841 1398 SMART PB1_new 205 294 IPR000270 GO:0005515
Lja6g1841 1398 ProSiteProfiles Protein kinase domain profile. 1108 1374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1841 1398 ProSitePatterns Protein kinases ATP-binding region signature. 1114 1145 IPR017441 GO:0005524
Lja6g1841 1398 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 926 1378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1841 Lja-Chr6 45749498 45756593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1841 190 666 MAP Kinase Kinase Kinase AT3G46920 40.541 5.44e-89 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lja6g1841 PK_Tyr_Ser-Thr 8.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1841 - - gmx:100776264 1940.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1841 6 45749498 45756593 Lja6g1841 6 45749498 45756593 ECH
Lja4g1694 4 16029614 16037882 Lja6g1841 6 45749498 45756593 PCT
Lja4g1832 4 17862551 17869290 Lja6g1841 6 45749498 45756593 PCT