Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1839 ATGGCTTATCACGACCATCTATCACACGAGATCAGTTTTCAGCAATTCACGGACGACCAGCAGATGAGTCATCAAGGAAGAGACATGCAGCAGAGGATGATGCCGCTCTCAGCCCCCGGCGGAGGAGCGGCGCCGACGTGGCTCAACAACGCGGCGGCGCTCCGGCAGCAGAATTTCCTGCATCTCCAGCCGGACTCCGCGGCGCAGAACGACGACGTGGTTCGGGGCCTGATGGAGAAGAGCGGCGGCGATCGAGACCACAACCACAACGGCGAGTCGGAGGACTTGGCGGAGTATAAGGCGGACATTCTGGGACATCCGCTGTACGACCAGCTGCTGTCGGCGCATGTTTCGTGTTTGAGGATCGCGACGCCGGTGGACCAGCTTCCTCGGATCGACGCGCAGCTGCAGCAGGCGCAGCGCGTGGTGGACAAGTACTCTCGCCTTGGGAATGGTGTGGTGGATGAGAAGGAGCTAGATCAATTCATGACGCATTATGTTCTGCTGCTGTGTGCTTTTAAAGAACAATTGCAACAGCATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGCTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCGGGTGAGGGAACGGGTGCAACAATGTCTGATGATGAAGAAGACCAAGCAGAGAGCAATGCTGCCAACTTATACGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGGCCTCTTGTTCCCACTGAAAGTGAAAGGTCTTTGATGGAGCGTGTGAGGCAGGAGTTGAAGCATGAGCTCAAGCAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCTGGGAAGCTCCCTGGCGACACCACCTCCCTTTTGAAACAATGGTGGCAGTCACATTCTAAATGGCCTTATCCAACTGAAGAAGACAAGGCAAGGCTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAACAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACCAATCCTTCCTCTTCTACTGGTGCCGGAACCAAAACCAAGCGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTAA 1122 0.5276 MAYHDHLSHEISFQQFTDDQQMSHQGRDMQQRMMPLSAPGGGAAPTWLNNAAALRQQNFLHLQPDSAAQNDDVVRGLMEKSGGDRDHNHNGESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQAQRVVDKYSRLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNAANLYEGSMDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGAGTKTKRKSSGAGETSNQSFM* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1839 373 CDD homeodomain 285 346 IPR001356 GO:0003677
Lja6g1839 373 Pfam ELK domain 262 283 IPR005539 GO:0003677
Lja6g1839 373 MobiDBLite consensus disorder prediction 203 225 - -
Lja6g1839 373 SUPERFAMILY Homeodomain-like 284 349 IPR009057 -
Lja6g1839 373 SMART ELK_2 262 283 IPR005539 GO:0003677
Lja6g1839 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 366 - -
Lja6g1839 373 SMART KNOX2_2 148 204 IPR005541 GO:0003677|GO:0005634
Lja6g1839 373 MobiDBLite consensus disorder prediction 339 373 - -
Lja6g1839 373 Pfam KNOX1 domain 99 139 IPR005540 GO:0003677|GO:0005634
Lja6g1839 373 Pfam Homeobox KN domain 302 341 IPR008422 GO:0003677|GO:0006355
Lja6g1839 373 Gene3D - 281 354 - -
Lja6g1839 373 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Lja6g1839 373 Pfam KNOX2 domain 154 203 IPR005541 GO:0003677|GO:0005634
Lja6g1839 373 SMART HOX_1 284 349 IPR001356 GO:0003677
Lja6g1839 373 MobiDBLite consensus disorder prediction 13 29 - -
Lja6g1839 373 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 35 366 - -
Lja6g1839 373 ProSiteProfiles 'Homeobox' domain profile. 282 345 IPR001356 GO:0003677
Lja6g1839 373 ProSiteProfiles ELK domain profile. 262 282 IPR005539 GO:0003677
Lja6g1839 373 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1839 Lja-Chr6 45741987 45746233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1839 65 359 Homeobox Transcription Factor Family AT5G25220 75.163 1.41e-161 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja6g1839 KNOX2 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1839 - - lja:Lj6g3v1088990.1 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1839 6 45741987 45746233 Lja6g1839 6 45741987 45746233 ECH
Lja4g1831 4 17853563 17860768 Lja6g1839 6 45741987 45746233 PCT