Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1819 ATGGCTGTGGAGAATCAAAGGGGTCATTTGGTGGATGAAGATGCGGGCCGTGACAGGTTTCCTGTGGGTATGAGAGTTTTGGCTGTGGATGACGACCCTACTTGTCTCAGAGTGTTGGAGAATCTGCTCCGCAAATGCCAGTATCATGTTACAATAACTAATCAGGCGGTTGAGGCGCTGAAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTAGTTATCAGTGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACTTGCCAGTTATCATGTTGTCAGCACACAGTGACACAAAGCTGGTGATGAAGGGTGTTAGACATGGTGCGGTTGACTATTTGTTGAAACCTGTTCGAATTGAAGAGCTCAAGAACATATGGCAACATGTTGTTCGAAGAAAAACTTCTGATGGAAAGGATCAGAATAAGGCTTCCAATGAGGAAAGGGGTCCTAATGTGTCTGGGGGAGGCAGCCAAGGCATCATATCGGAAAACAGTGCTGACCAGAATAGAAAGCTTGGAAAAAAACGGAAGGACCAAAATGAGGAAGAAGATGAAGACGGTGATGGGAATGGAGAGGATGATGATCCATCATCACAGAAGAAACCTCGTGTGGTTTGGTCTGTTGAGCTGCATAAAAAATTTGTTGCCGCTGTTAATCAACTCGGCCTAGATAAAGCTGTTCCTAAGAAAATACTTGACATGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCTAGCCATCTGCAGAAATATAGACTCTATCTGAAAAAGGCAACCCAACAAGTTAACATGGTTGCTGCATTTGGTGGTGGTGATGCTTACCTGCGTATGGGTGCTATAGATGGCTTTGGAGATTTCTGCACCTCGTCTGCATCTGGAAGGATCTCAAGCGCCACATTGCCATCATATGCGTCAAATGGAATTTTTGGTAGGCTGAATTCCCCAGCTAGCTTGAGCTTGAGAGGAATTAGTTCTCCTTCACTAATTCGGCCAGTTCCGTCTCAAAACATCAATAATTCCTTAAACACACTTGCAACCATTCAGCCATCCATATTTCCTGCAAATCAAAGCCCAAGCTTACTGCAGGGCATTCCAACATCAATTGAGCTGAACCAATCTAAGCAAAATGGCTGTCCAACTGGCATATCGCAGTTAAGTCAAGTTGATTCAAGTAGATTTGCAGTTGCTGCCTCTGGCTTCTCAGACAGTAGGGCTACTGTTAGTAATTCAAACAGTTCTCTACCCGGTGTCTCAAATAATCATTTAATGTTACATGGAAATCCACACCAAACGCATAATGCAGGAGCTTTTAGAAATCAGTCTTCTGTTAGAGCGCCTTCTTTGAGCACAGACTCTTTTGACATTGGCATTGGTGGTTCATCTAATTTATTGGATTATAATCGGTGTAATGAAAATTGGCAGAACGCATCTCAGCTGTCTAAATTCCCTGCCAATTCTTTACCACTGTGTGAGGCTTTCAATAATGATCAACTGCCTCCAACTAGCATAAATGTTTCTAACTCGAGTACTCATATTGATAACAGTCAGGTGGGTTTTTCTTCTGGAATCGCAATTGCTGCTCCTATGGGTGATGCTAGAAATGATCTGCGATGCCAAGAAGGCTTAATTGGGAATGTCATACAGCCTTCAAGTTACACAGCACGAGAAAGGTGGGAAGATTACAACCAAAACACAAGTCGTCCCTTCAATCCTGTGAATTCACAGGTTTCTCCCCATGGAGTGACGGGTTCTTTACGGAATAGCTTAAGCCAAAATAAAGCAATGTGCAGCAATAGTGCATCTTTGGCTGGCCATCTAAATGGTGCTTCCACATCAATTGCTCGGTGCACTGAAGTTGAGAATTTCTCTTCGGACATGCGATTGAAGTCAAATGAGGCCTACATGTTGGAGCAGATGAAGTCCCATGATGGGTTTATGCAAAATTTTGGGACCTTGGATGACATCATGGGTGCAATGGTCAAAAGGGAACAAAATGAGTTGACTTTGATGGATGGAGAAATGGGATTTGATGCTTACCCTGTTGGATCATGCATCTGA 2091 0.4328 MAVENQRGHLVDEDAGRDRFPVGMRVLAVDDDPTCLRVLENLLRKCQYHVTITNQAVEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVRHGAVDYLLKPVRIEELKNIWQHVVRRKTSDGKDQNKASNEERGPNVSGGGSQGIISENSADQNRKLGKKRKDQNEEEDEDGDGNGEDDDPSSQKKPRVVWSVELHKKFVAAVNQLGLDKAVPKKILDMMNVEGLTRENVASHLQKYRLYLKKATQQVNMVAAFGGGDAYLRMGAIDGFGDFCTSSASGRISSATLPSYASNGIFGRLNSPASLSLRGISSPSLIRPVPSQNINNSLNTLATIQPSIFPANQSPSLLQGIPTSIELNQSKQNGCPTGISQLSQVDSSRFAVAASGFSDSRATVSNSNSSLPGVSNNHLMLHGNPHQTHNAGAFRNQSSVRAPSLSTDSFDIGIGGSSNLLDYNRCNENWQNASQLSKFPANSLPLCEAFNNDQLPPTSINVSNSSTHIDNSQVGFSSGIAIAAPMGDARNDLRCQEGLIGNVIQPSSYTARERWEDYNQNTSRPFNPVNSQVSPHGVTGSLRNSLSQNKAMCSNSASLAGHLNGASTSIARCTEVENFSSDMRLKSNEAYMLEQMKSHDGFMQNFGTLDDIMGAMVKREQNELTLMDGEMGFDAYPVGSCI* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1819 696 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Lja6g1819 696 MobiDBLite consensus disorder prediction 156 177 - -
Lja6g1819 696 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Lja6g1819 696 Gene3D - 24 201 - -
Lja6g1819 696 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Lja6g1819 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 677 IPR045279 GO:0009736
Lja6g1819 696 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lja6g1819 696 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lja6g1819 696 MobiDBLite consensus disorder prediction 142 212 - -
Lja6g1819 696 SMART REC_2 24 136 IPR001789 GO:0000160
Lja6g1819 696 Gene3D - 207 269 - -
Lja6g1819 696 SUPERFAMILY CheY-like 23 145 IPR011006 -
Lja6g1819 696 CDD REC_typeB_ARR-like 26 140 - -
Lja6g1819 696 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Lja6g1819 696 MobiDBLite consensus disorder prediction 178 192 - -
Lja6g1819 696 PIRSF RR_ARR_type-B 1 696 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lja6g1819 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1819 Lja-Chr6 45491442 45496249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1819 18 696 Response Regulator Gene Family AT2G25180 40.407 1.67e-128 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja6g1819 Response_reg 1.1e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1819 K14491 - gmx:100776075 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1819 6 45491442 45496249 Lja6g1819 6 45491442 45496249 ECH