Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1815 ATGACACATCAATTAGGATCTTCATCCTCTGGTGCTAAAAGTAATGGTCTCGATGGAGAGATATGCACAACAAAGGAAAAGAGCTTCCCATGCAAATTTTGCAAGCAAAAGTTCTCTACCTCACAAGCTTTGGGGGGACACCAGAACGCACATAAAAGAGAGCGTTCCTTAGAAAAATTTTGTGAGCAACTTGATGCTAGTTGTTTTGAGCCTTCACACTTTCCTTCTTATTCTTCATATCCAACCCTCCATGAAGGTTTAGACAGGTCATTTTTTGATGGCTCCTTGAATCTCAAGTCTTCTAATCCTTTGATGACCTCAAGTGGATTTCGATACGATCAAGGCTCACCATATTTCAATGCGATCGGAAATATAAGAAGTCATCATTCAAGGTTAGAGGATTATCGTAATGGAACACTTGCACTATTCCCAAATTCCACCAATGTAGCAAGCCAAGTTATGAGCACAACGCTCACTTCAAGGTCAAGGAATGACGGTGAAACTCTTGCACTTTTCCCAAATGTTAGTGTAGCAAGTCAAGCTCCAATGCCAATAGGAAGTAATTCTCGTTCTATGCCGGAAGAAACTTCTGAACTGCCAGCAACTGATATTGATTTGTCACTTAGGCTTGGTTTCACATCTTGA 645 0.4078 MTHQLGSSSSGAKSNGLDGEICTTKEKSFPCKFCKQKFSTSQALGGHQNAHKRERSLEKFCEQLDASCFEPSHFPSYSSYPTLHEGLDRSFFDGSLNLKSSNPLMTSSGFRYDQGSPYFNAIGNIRSHHSRLEDYRNGTLALFPNSTNVASQVMSTTLTSRSRNDGETLALFPNVSVASQAPMPIGSNSRSMPEETSELPATDIDLSLRLGFTS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1815 214 Gene3D Classic Zinc Finger 8 70 - -
Lja6g1815 214 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Lja6g1815 214 SUPERFAMILY beta-beta-alpha zinc fingers 24 57 IPR036236 -
Lja6g1815 214 PANTHER ZINC FINGER PROTEIN JAGGED 12 210 IPR045320 GO:0003700
Lja6g1815 214 PANTHER ZINC FINGER PROTEIN KNUCKLES 12 210 - -
Lja6g1815 214 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1815 Lja-Chr6 45455835 45456479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1815 25 81 C2H2 Transcription Factor Family AT5G01860 56.140 3.13e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g1815 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1815 - - gmx:102668197 98.2117