Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1809 ATGGCTGGAACTGGATTGTTTGCTGAAATCTTGGATGGTGAAGTATACAAGTACTACTCTTGTGGAGAATGGACAAAATCTTCTTCAGGAAAAAGTGTTTCCATCATCAATCCCACTACTAGGAAGACTCAATACAAAGTTCAAGCTTGTTCACAAGAAGAAGTTAATAAGGTAATGGATTCAGCAAAATCAGCACAAAAGTCATGGGCAAAGACCCCGCTCTGGAAGCGGGCTGAGCTTCTACACAAGGCAGCTGCTATTCTCATAGAACATAGAGATCCAATTGCTGAGTGCCTGGTCAAAGAAATAGCAAAGCCAGCCAAAGATGCAGTTACAGAGGTTGTGAGGTCAGGAGATCTGGTTTCTTATTGTGCTGAAGAGGGGGTAAGAATTTTGGGAGAGGGGAAGTTCTTGGTGTCAGATAGCTTTCCTGGAAATGAAAGGACAAAATATTGCCTCACATCAAAGGTTCCATTAGGAGTGATTTTAGCTATCCCGCCTTTTAACTATCCTGTCAACCTTGCTGTCTCAAAAATTGCTCCTGCGCTGATCGCCGGAAACTCAATTGTGCTCAAGCCTCCAACCCAGGGAGCTGTTTCTGCTCTTCACATGGTGCATTGTTTTCACCTGGCTGGTTTTCCCAAAGGCCTAATAAGTTGTGTCACAGGCAAAGGCTCAGAAATTGGTGACTTCCTTACTATGCATCCAGGAGTGAATTGCATAAGCTTCACTGGTGGAGATACTGGTATTGCAATTTCAAAGAAGGCAGGCATGATTCCTTTGCAAATGGAGCTTGGAGGAAAGGATGCCTGCATTGTACTTGAGGATGCGGACCTGGATTTGGTGGCTTCAAACATTATAAAAGGAGGCTTTTCATACAGTGGTCAGAGATGCACAGCTGTTAAGGTTGTCTTAGTGATGGAAACTGTTGCTGATAAATTGGTTGAGAAAGTGAAGGCTAGGGTGGCCAAACTAAGTGTTGGAGCACCAGAAGATAACTCTGATATCACCCCAGTTGTTTCAGAATCCTCAGCCAATTTCATTGAAGGCCTGGTCTTGGATGCTAAAAAGAAAGGAGCAACATTCTGCCAGGTGTATAGAAGGGAAGGGAATCTCATTTGGCCCTTGCTGCTTGATAATGTTAGGCCTGATATGAGAATTGCATGGGAGGAGCCATTTGGACCAGTTTTGCCTGTTATTAGGATCAATTCCATTGAAGAAGGGATCCACCATTGTAATTCTAGCAATTTTGGACTTCAGGGTTGTGTCTTCACAAAGGATGTGAACAAAGCAATATTGATCAGTGATGCAATGGAGACAGGCACAGTTCAGATAAATTCTGCCCCAGCTCGTGGACCTGATCATTTTCCCTTTCAGGTGATTGGATCTCAAGGGATAGCCAACAGCATTAACATGATGACCAAAGTTAAAACGACTGTGATCAACTTGCCTACCCCTTCTTATGCCATGGGCTAG 1476 0.4383 MAGTGLFAEILDGEVYKYYSCGEWTKSSSGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILIEHRDPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKVPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVASNIIKGGFSYSGQRCTAVKVVLVMETVADKLVEKVKARVAKLSVGAPEDNSDITPVVSESSANFIEGLVLDAKKKGATFCQVYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSIEEGIHHCNSSNFGLQGCVFTKDVNKAILISDAMETGTVQINSAPARGPDHFPFQVIGSQGIANSINMMTKVKTTVINLPTPSYAMG* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1809 491 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Lja6g1809 491 Pfam Aldehyde dehydrogenase family 24 478 IPR015590 GO:0016491
Lja6g1809 491 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 491 - -
Lja6g1809 491 SUPERFAMILY ALDH-like 15 479 IPR016161 GO:0016491
Lja6g1809 491 PANTHER ALDEHYDE DEHYDROGENASE 1 491 - -
Lja6g1809 491 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Lja6g1809 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 33 265 IPR016162 GO:0016491
Lja6g1809 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 457 IPR016163 GO:0016620
Lja6g1809 491 CDD ALDH_F11_NP-GAPDH 15 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1809 Lja-Chr6 45397528 45413515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1809 1 491 Aldehyde Dehydrogenase Gene Family AT2G24270 88.508 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1809 K00131 - tcc:18587864 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1809 6 45397528 45413515 Lja6g1809 6 45397528 45413515 ECH