Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1807 ATGCAACCCTGTAGCAGAGAAATGCAAGGATCAATCAACTCCTTCCTCACCACCACCACCACCACCACCACCAACAACCCTTCTCAAATCTCCCTTCAAGACCTCCACCACCACCACCACCACCACAACACCACCACCACCCAGATCCAAAATTCACCCACCATGAACAACCATCATCAACAACTCAACCCTCAGTTCGACCCAACCTCCCATGACGACTTCCTGGAGCAAATGCTCTCCACCCTCCCTTCTTTCTGGGACCCCAATTCTGACCTCTCCGCCGAAACCACCCCCGATAATGTCGCCGCTTTCCCCTTCGACGAACACTCCACCCTCAACTCCAAGTTCCGTAACCACCAGATCACCTCCCCCACCACTAAAGCCGCCGCCGCTCTCATGCTCCAACAACACCTCCTCCAGATGCCAGCAAACGACGTCGTCGACCCCACAAACTTCTTCAAATCCCCCAATCCCGGTGGTGAAGCTTCAGCTTCAGTTCAAGCTCTGTACAACGGTTTCACCGGATCTCTGAATGGCACCCAACCTCAGCAGCATTTTCAACATCCTCCTCAGGGAAATTCGAATCAGATTCAGGGGCAGAATTTTGGGGCAACAAACCAGGCTCCACCGGCGAGTGGCTCAGCCGGCGGCGGCGGCAACCAGGGTCAGGCGAAGCCGAGGGTGAGGGCACGGAGAGGTCAAGCGACGGACCCACACAGCATTGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAAAGAATGAAGGCACTTCAGGAACTGGTCCCCAATGCTAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGTGGTGCAGCTGCCGTGGCTCCCCTTGTTGCTGATATCTCCTCTGAGGGAGGAGGAGGAGGAGGAGGCGGTGACTGCGTCACCAACGGAGCTGGTGGGGTCCTCCCCCGGAGCACCACCACCGCAGCGTCAACCACAAACGACAGCCTCACCATGACAGAGCACCAGGTAGCCAAGCTAATGGAAGAAGACATGGGCTCCGCCATGCAGTATCTCCAAGGCAAAGGACTCTGCCTCATGCCAATTTCCCTCGCCACCGCAATCTCCACCGCCACGTGTCACACCAGGAGCCCCTTGATTCCAAACAATCTCGCCAACCTTGCCGCCGCCGCTGCATCTAACGGCGAAGGGCCGTCATCACCGAACATGTCCGTGCTGACGGTGCAGTCTGCGGTGGCGGGTAACGACAGCACCGTCAAAGACGTGTCGAAACCGTGA 1323 0.5646 MQPCSREMQGSINSFLTTTTTTTTNNPSQISLQDLHHHHHHHNTTTTQIQNSPTMNNHHQQLNPQFDPTSHDDFLEQMLSTLPSFWDPNSDLSAETTPDNVAAFPFDEHSTLNSKFRNHQITSPTTKAAAALMLQQHLLQMPANDVVDPTNFFKSPNPGGEASASVQALYNGFTGSLNGTQPQQHFQHPPQGNSNQIQGQNFGATNQAPPASGSAGGGGNQGQAKPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGGGGGGDCVTNGAGGVLPRSTTTAASTTNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRSPLIPNNLANLAAAAASNGEGPSSPNMSVLTVQSAVAGNDSTVKDVSKP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1807 440 MobiDBLite consensus disorder prediction 173 219 - -
Lja6g1807 440 MobiDBLite consensus disorder prediction 173 240 - -
Lja6g1807 440 MobiDBLite consensus disorder prediction 45 63 - -
Lja6g1807 440 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983
Lja6g1807 440 PANTHER TRANSCRIPTION FACTOR BHLH69 62 397 - -
Lja6g1807 440 SMART finulus 240 289 IPR011598 GO:0046983
Lja6g1807 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Lja6g1807 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 294 IPR036638 GO:0046983
Lja6g1807 440 Gene3D - 229 291 IPR036638 GO:0046983
Lja6g1807 440 MobiDBLite consensus disorder prediction 35 63 - -
Lja6g1807 440 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1807 Lja-Chr6 45384051 45387429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1807 203 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.471 8.03e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g1807 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1807 - - lja:Lj6g3v1078430.1 765.763