Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1805 ATGGCTGACAAATCCAGTAGCAGTAACGATGTGAGCTCCACATTGCTCCATGGCAAGTACGAGCTAGGCCGTCTTCTCGGCCATGGAACATTCGCGAAGGTGTACCACGCGCGGCACCTTGAGTCCGGCCGGAGCGTGGCGATCAAGGTGGTGGGGAAGGAGAAGGTGATCAGAGTCGGCATGATGGAGCAGATCAAGCGAGAAATCTCCGCCATGAGCATGGTCAAGCACCCCAACATTGTCCAGCTTCACGAGGTCATGGCCAGCAAAACCAAGATCTACATCGCCATGGAGCTCGTTCGCGGCGGCGAGCTTTTCAACAAGATCGCCAGAGGCCGCCTGAGAGAGGACGTCGCTAGGCTCTACTTCCAGCAGTTAATCTCCGCCGTTGATTTCTGCCACAGCCGCGGTGTCTACCACCGTGATCTCAAACCGGAGAATCTCCTGCTCGACGAGGACGGTAGCCTCAAGGTGACCGACTTCGGTCTCAGCACATTCGCCGAGCACATGCGCCAGGACGGGCTGCTCCACACCACATGCGGAACTCCGGCCTACGTTGCGCCGGAGGTCATCGGAAAAAAGGGCTATGACGGCGCCACGGCTGATATCTGGTCCTGTGGGGTTATCCTGTACGTGCTCTTAGCAGGGTTTCTACCCTTCCAGGACGAGAATCTGATGGCTATGTACAAGAAGATTTACAGGGGAGACTTCAAGTGCCCTCCATGGTTCTCCCCTGAAGCTCGAAGGCTCATCACCAAGCTTCTCGACCCGAATCCGAGTACCCGAATTACAATCTCCAAGATCATGGAGTCTTCCTGGTTCAGAAAATCGGCGAAGAGTGGTGCTGAGATGAAGAAGCATGAGCAGGAGCTGGAATTTGATTTACAGGAGAAATTGAAGCTGCAGGAGCAGGAGCAAGTGCAGGAGCAACCCTCGACGATGAATGCCTTTCACATAATTTCGCTTTCAGAGGGGTTTGATTTGTCGCCGCTGTTTGAGGAGAGGAAGAGGGAGGAGAAGGAAGAGATGAGATTCGCGACGACTAGGCCGGCAAGCAGTGTGATTTCGAGGCTGGAGGAAGTGGCGAAGGCGGGGAAGTTTGATGTGAAGAAGAGTGAAGGCAAGGTGAGGTTGCAGGGTCAGGAGAGGGGGAGGAAGGGGAAGCTGGCTATTGCGGCGGACATGTATGCGGTGACGCCGTCGTTTCTGGTGGTTGAGGTGAAGAAGGACAATGGTGACACCTTGGAGTACAACCAGTTCTGCAGCAAAGAGCTTCGCCCTGCACTCAAGGACATAGTGTGGAGGACTGAGACTCCAACACCAGCTTGA 1329 0.5493 MADKSSSSNDVSSTLLHGKYELGRLLGHGTFAKVYHARHLESGRSVAIKVVGKEKVIRVGMMEQIKREISAMSMVKHPNIVQLHEVMASKTKIYIAMELVRGGELFNKIARGRLREDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGSLKVTDFGLSTFAEHMRQDGLLHTTCGTPAYVAPEVIGKKGYDGATADIWSCGVILYVLLAGFLPFQDENLMAMYKKIYRGDFKCPPWFSPEARRLITKLLDPNPSTRITISKIMESSWFRKSAKSGAEMKKHEQELEFDLQEKLKLQEQEQVQEQPSTMNAFHIISLSEGFDLSPLFEERKREEKEEMRFATTRPASSVISRLEEVAKAGKFDVKKSEGKVRLQGQERGRKGKLAIAADMYAVTPSFLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTETPTPA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1805 442 Gene3D Transferase(Phosphotransferase) domain 1 102 281 - -
Lja6g1805 442 Gene3D Phosphorylase Kinase; domain 1 17 101 - -
Lja6g1805 442 CDD CIPK_C 315 430 - -
Lja6g1805 442 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1805 442 Coils Coil 284 304 - -
Lja6g1805 442 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1805 442 CDD STKc_SnRK3 19 273 - -
Lja6g1805 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lja6g1805 442 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Lja6g1805 442 Pfam NAF domain 311 371 IPR004041 GO:0007165
Lja6g1805 442 PANTHER - 12 436 - -
Lja6g1805 442 Gene3D Kinase associated domain 1, KA1 308 435 - -
Lja6g1805 442 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Lja6g1805 442 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1805 442 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 12 436 - -
Lja6g1805 442 SUPERFAMILY Protein kinase-like (PK-like) 17 298 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1805 Lja-Chr6 45353558 45355787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1805 4 442 CBL-interacting serine-threonine protein kinases AT4G30960 71.525 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g1805 Pkinase 8.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1805 - K07198 gmx:547644 715.687