Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1802 ATGGGGCTGGGGGTATTTGGTTCTGTTCTAATTCTGACACTCTTCTTCAAGCATTTAGCTTCCCAGCAACCAAATACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGTTATAGCATCACCCCACACCTACAACTTTTCTTCTTCTGTTTGTTCATGGAAAGAGGTTACCTGTGATGCCAAGAGAGAGCATGTTGTTGAGTTAGTTGTTTCTGGTATGGGCCTCTCTGGTCCTATTCCAGATACCACCATAGGCAAGCTCAGCAAGCTTCAACACTTGGACCTCAGCAACAACAAAATCAGTGGCTTGCCTTCAGATTTCTGGAGTTTAACCTTGCTCAAGAGCCTGAACCTCTCCTCCAATCAGATTTCTGGAGCATTGACTAGCAACATTGGAAACTTTGGTTTGCTCGAAATGTTTGATTTTTCCAGCAACAATTTCTCTGGGGAAGTTCCTGAAGCAATTGGTTCCTTGAAGAGTCTGAGGGTCCTCAAACTTGACCACAACAGGTTTGAACAAAGCATACCAGCTGAAATTTTGAAATGCCAATCTCTAGTTTCAATTGATCTGTCATCAAACCAGCTAAGTGGGGAACTTCCAAATGGTTTTGCTTCTGCTTTTCCTAAGCTTATTACTTTGAACCTTGCTGGGAATAAAATATTTGGAAGGGATTCAGATATTTCTGGGTTAAAGTCCATTGTGAGTCTCAATATATCAGGCAATGCATTTCAGGGTTCTGTCATGGGAGTGTTTCAAGGAAAGCTCATAGTCATGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCCCAGGTACAATCCATTAACAATTCGTCTCAATTAGTTTATCTGGATTTGTCAGAGAATCAGCTTAGTGGGGAGATTTTCCAAAATTTGAATGAATACCGGAATATAAAGCACCTTAACCTTGCTCACAATAGATTTACCAGACAGAAATTCCCCAAGATTGAAATGCTCTCAGGATTGGAATATCTGAACTTGTCCCATACTAGTCTGATAGGTAGCATTCCTGATGAAATCTCACAACTGAGTAATTTGAATGCACTTGATATTTCAGTGAATCATCTTATAGGGGAAATCCCTTTACTAGTGAACAAAAACCTCCAAGTTCTTGACCTTTCAAACAACAATTTGAGTGGAGAAGTCCCTCCATTAGTCTTAGAGAAACTCCCTAGGATGAAGAAATACAACTTCTCTTATAATAATAACTTAACCATCTGTCCTTCTGAAATCAAACCAGTTATCCTCCAAACAGCTTTTTTTGGAGTAGTGAATAGTTGTCCGATTGCTGCAAACCCAAGTCTTTTCAAAAAGAGAGACACTCTGCACAAGGGAATGAAGCTAGGTCTGGCATTGGCCCTCCCAATGATCTGTTTGGTTTCTGGACTTTTGTTTCTTCTAGCATGTGGTTGCCTTAGGAAAAGAAAGTCGCGGCCAGTTAAGCAAACGTCACACAAAGAAGAACAAAACATGTCAGGTCCCTTTTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAAGAAGCAACATCGGTCCCGGTGGTAATCTTTGAGAAACCACTGCTGAATATTACATTTGCAGACCTCTTGTCAGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGGAAATTTGGACCTGTTTATAGAGGTTTTATACCTGGTGGAATTCATGTAGCAGTTAAAGTTCTGGCCATTGGATCTACTATGACAGATAAAGAAGCTGCAAGAGAGCTAGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGATATTGCGTAGCTGGGGATCAGAGAATTGCCATTTATGAATACATGGAGAATGGGAACCTGCAAAATTTGCTGTATGACTTGCCACTTGGGGTACTACAACAAAGGACAGATGATTGGAGCACAGATGCATGGGAAGAAGATAACAACAGTAATGGCATTCAAAATGATGGCTCTGAAGGGTTGCTCACAACATGGCGGTTCCGCCACAAAATTGCTCTTGGCACTGCCAGAGCACTGGCATTTCTGCATCATGGATGCTCGCCGCCAATCATTCACAGGGATGTCAAAGCTAGCAGTGTTTATTTGGATTACAACTTGGAACCAAGATTGTCTGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGCTTGGATGAGGAGATTGCACTTTGTACACCTGGTTATGTTCCCCCTGAGTTTTCTCAACAAGAATTTGACACCCCAAGTCCAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTGTTTGAGATTTTAACTGGGAAGAAGCCAGTGGGAGATGATTACCCTGATGAGAAAAAAGGAACTTTGGTGAGCTGGGTCAGAGGACTGGTCAGAAAGAACAAAGTTTCAAGAGCTATTGATTCGAAAATTCGTGACACAGGACCAGAAGAACAGATGGAGGAAGCCCTTAAGATTGGTTATCTGTGCACTGCTGATCTTCCCTCTAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTTCTGCTAATTAG 2571 0.4166 MGLGVFGSVLILTLFFKHLASQQPNTDDFFVSEFLKKMVIASPHTYNFSSSVCSWKEVTCDAKREHVVELVVSGMGLSGPIPDTTIGKLSKLQHLDLSNNKISGLPSDFWSLTLLKSLNLSSNQISGALTSNIGNFGLLEMFDFSSNNFSGEVPEAIGSLKSLRVLKLDHNRFEQSIPAEILKCQSLVSIDLSSNQLSGELPNGFASAFPKLITLNLAGNKIFGRDSDISGLKSIVSLNISGNAFQGSVMGVFQGKLIVMDLSRNQFQGHISQVQSINNSSQLVYLDLSENQLSGEIFQNLNEYRNIKHLNLAHNRFTRQKFPKIEMLSGLEYLNLSHTSLIGSIPDEISQLSNLNALDISVNHLIGEIPLLVNKNLQVLDLSNNNLSGEVPPLVLEKLPRMKKYNFSYNNNLTICPSEIKPVILQTAFFGVVNSCPIAANPSLFKKRDTLHKGMKLGLALALPMICLVSGLLFLLACGCLRKRKSRPVKQTSHKEEQNMSGPFSFHTDSTTWVADVKEATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFIPGGIHVAVKVLAIGSTMTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYEYMENGNLQNLLYDLPLGVLQQRTDDWSTDAWEEDNNSNGIQNDGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIALCTPGYVPPEFSQQEFDTPSPKSDVYCFGVVLFEILTGKKPVGDDYPDEKKGTLVSWVRGLVRKNKVSRAIDSKIRDTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPSAN* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1802 856 Pfam Leucine Rich Repeat 376 393 IPR001611 GO:0005515
Lja6g1802 856 PRINTS Leucine-rich repeat signature 92 105 - -
Lja6g1802 856 PRINTS Leucine-rich repeat signature 352 365 - -
Lja6g1802 856 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 853 - -
Lja6g1802 856 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Lja6g1802 856 SMART LRR_sd22_2 280 303 - -
Lja6g1802 856 SMART LRR_sd22_2 374 389 - -
Lja6g1802 856 SMART LRR_sd22_2 112 135 - -
Lja6g1802 856 SMART LRR_sd22_2 89 107 - -
Lja6g1802 856 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 853 - -
Lja6g1802 856 Gene3D Ribonuclease Inhibitor 177 273 IPR032675 -
Lja6g1802 856 Gene3D Ribonuclease Inhibitor 32 176 IPR032675 -
Lja6g1802 856 Pfam Protein tyrosine and serine/threonine kinase 551 847 IPR001245 GO:0004672|GO:0006468
Lja6g1802 856 SMART LRR_typ_2 232 255 IPR003591 -
Lja6g1802 856 SMART LRR_typ_2 160 184 IPR003591 -
Lja6g1802 856 SMART LRR_typ_2 328 352 IPR003591 -
Lja6g1802 856 SMART LRR_typ_2 112 136 IPR003591 -
Lja6g1802 856 SMART LRR_typ_2 89 111 IPR003591 -
Lja6g1802 856 SMART LRR_typ_2 375 398 IPR003591 -
Lja6g1802 856 ProSiteProfiles Leucine-rich repeat profile. 376 398 IPR001611 GO:0005515
Lja6g1802 856 SUPERFAMILY L domain-like 42 419 - -
Lja6g1802 856 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Lja6g1802 856 Gene3D Ribonuclease Inhibitor 274 426 IPR032675 -
Lja6g1802 856 SUPERFAMILY Protein kinase-like (PK-like) 525 848 IPR011009 -
Lja6g1802 856 Gene3D Transferase(Phosphotransferase) domain 1 650 856 - -
Lja6g1802 856 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Lja6g1802 856 ProSiteProfiles Protein kinase domain profile. 547 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1802 Lja-Chr6 45323264 45326479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1802 63 851 Receptor kinase-like Gene Family AT5G07280 32.678 2.64e-109 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lja6g1802 PK_Tyr_Ser-Thr 1.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1802 - - gmx:100807051 1394.79