Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1800 ATGGCCGAGACGGCGACTCCACGACTCACTCACTCGCCGCCGCCGCCACCATCCACCGAGTTACGCACTTCCAGTCCTCCCGATGAAGCGCAGCCCAATTTGGAAACCCTAGCTACCCCCTCTTCGCCACCGCGCCATCACACCGATCATTTGCAGGGAAGCTCCACCGCGCCTGAGAACGGCAAAGATGAAACTGAGGCGCCAGCCAGGCCTCCAGGCAATGAAATTATTGTAAAGGACGCAGTTGAGGAACCTCAAGTGGAAACAAAGAACCAACTCCAGGCGTGTTCAACTCCATTGTCTGCCCCTAGTCCAATGGTACCAGAACAGAGACTTTCTCCTCCAAAGGCTACCAGTGTATATGTGCTGGAAGTAGACAAAACAACTCCTTCAAGTGGTACAACTTTTTCTTCTGTTCCTGTTGCAAGGTCATCTGCAACCGATGGATATAATTGGCGGAAGTACGGTCAGAAGCAAGTGAAAAGTCCTATTGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGCTTGTTGTGCTAAGAAGGTTGAATTCTGTGACCATTCAGGTCATGTGTCGGAGATTGTATATAAAAGTCAACACAGTCATGATCCACCACATAAAACTAATCCTGCTAAGGAAAGTAAGTCCCTGGCTTCCAAGGAACCTAATGTAGAAAACACCGTTCCAAAGCAGTCTGTCAAAGTTCTAAATGATTCTGATCCATCACCTTCTCCGAAAAACCCTCTTCAAGAAGCACCTCGCAATCCTGATAAGAAACGACAAAACTCATCTGACAGTGGGAATGGTAAAGTTACTTTTAAGGAAGAGGATATTAACGAGCCAGAGCTGAAAAGAAGAATGAAGAAAGATGATTCAACATGCTTGGATTCACCAATAAAATCTGGAAAGAAACAAAAGTTTGTTGTACATGCGGCAGGGGATGTGGGGATATCAGGTGATGGGTACCGATGGCGCAAGTATGGACAAAAAATGGTGAAGGGGAAACCTCATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGCCCGGAAGCACATTGAGACTGCTGTGGATGACTCGAACGATGTCATCATCACATACAAGGGAGTACATGACCATGACATGCCTGTGCCTAAGAAACGACATGGCCAGCCAAATGCTCCACTCGTGGCTGCTGCAGCACCTGCTTCAATGAGCAATTTGCAGCTCATGAAAACTGACTCACCAAAAAACCAGAAAAATTCTCAATGTTCCGGGGAAATTGGTGGAGAATTAACTGGGGAAGCCTCGGAACTTGGTGGTGAGAAAGCAATTGAATCAGCTCGAGCTCTTCTGAGCATAGGTTTTGAAATTAAACCTTGCTGA 1371 0.4683 MAETATPRLTHSPPPPPSTELRTSSPPDEAQPNLETLATPSSPPRHHTDHLQGSSTAPENGKDETEAPARPPGNEIIVKDAVEEPQVETKNQLQACSTPLSAPSPMVPEQRLSPPKATSVYVLEVDKTTPSSGTTFSSVPVARSSATDGYNWRKYGQKQVKSPIGSRSYYRCTHSACCAKKVEFCDHSGHVSEIVYKSQHSHDPPHKTNPAKESKSLASKEPNVENTVPKQSVKVLNDSDPSPSPKNPLQEAPRNPDKKRQNSSDSGNGKVTFKEEDINEPELKRRMKKDDSTCLDSPIKSGKKQKFVVHAAGDVGISGDGYRWRKYGQKMVKGKPHPRNYYRCTSAGCPARKHIETAVDDSNDVIITYKGVHDHDMPVPKKRHGQPNAPLVAAAAPASMSNLQLMKTDSPKNQKNSQCSGEIGGELTGEASELGGEKAIESARALLSIGFEIKPC* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1800 456 MobiDBLite consensus disorder prediction 408 423 - -
Lja6g1800 456 MobiDBLite consensus disorder prediction 252 297 - -
Lja6g1800 456 SUPERFAMILY WRKY DNA-binding domain 314 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 MobiDBLite consensus disorder prediction 220 245 - -
Lja6g1800 456 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 45 454 - -
Lja6g1800 456 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 SMART WRKY_cls 146 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 MobiDBLite consensus disorder prediction 23 61 - -
Lja6g1800 456 MobiDBLite consensus disorder prediction 408 428 - -
Lja6g1800 456 ProSiteProfiles WRKY domain profile. 141 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 MobiDBLite consensus disorder prediction 1 115 - -
Lja6g1800 456 MobiDBLite consensus disorder prediction 197 298 - -
Lja6g1800 456 MobiDBLite consensus disorder prediction 197 214 - -
Lja6g1800 456 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 454 IPR044810 GO:0003700
Lja6g1800 456 Gene3D WRKY domain 303 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 Gene3D WRKY domain 134 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 SUPERFAMILY WRKY DNA-binding domain 145 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 MobiDBLite consensus disorder prediction 87 104 - -
Lja6g1800 456 Pfam WRKY DNA -binding domain 148 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1800 456 Pfam WRKY DNA -binding domain 320 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1800 Lja-Chr6 45302740 45307103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1800 63 456 WRKY Transcription Factor Family AT4G30935 51.597 1.19e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g1800 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1800 - - lja:Lj0g3v0274859.1 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1800 6 45302740 45307103 Lja6g1800 6 45302740 45307103 ECH