Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1794 ATGAAGGACATGATTCTTGAATCCCTTTTACAATCAGCATTCAAAGAGTATTTACATAAAGAGGTACCAAAAAACAACATGCCCTCAGCAGGAACAGAGAAGAATTGGGAAATTCAAGAGAATGAAGGACATATGAACCTTGACATCACCAAGTGCTTCGGGGAGTCACGTGCCAATTTGTCTAAAACAATTGCCAAATATGTGGTGAAGCTAAATCAAAACAAATCGCAATGTTTAGGCTTCCCAGTTAATCAAGAATTTAACTATGACGCATTGACACCGTTGTTGCATTATCACTTAAACAATGCTGGCGACCCATTTCTCGGGAGCGGCTATGGTCAAAATTCAGTAGAATTTGAAGTCTGTGTACTTGATTGGTTTGCAAAACTATGGCAGATGGAGAAGGGGGATTATTGGGGATACGTTACAACCGGTGGAACTGAAGGAAATTTACACGGAATTTTAATGGGGAGGGAAAAATTTCAAAACGGAATTTTATATACCTCAGAGAACTCGCATTATTCATTATTCAAAATAGCAAGGATGTACAGAATGCAATGTATAAAGGTCAACACATTAGTCTCGGGCGGGATTGATTGTGCTGATTTAAAGGCTTTACTTCTATTGCACAAGGACAAACCAGCTATCATCAACCTAAACATAGGAACAACTATGAAAGGAGCAATTGATAACATTGATCTCGTAATAGAAACACTTGAGGAATGTGGCTTTCCTCAGGATCGATTCTATATTCATTGTGATGGAGCTCTATCCGGAATAATGTTGCCGTTTCTTAAACAAGCTCCAAGGATTAACTTCAAGAAGCCGATTGGAAGTATATCTATTTCTGGCCATAAGTTCTTAGGATGCCCAATTCCTTGTGGTGTTATATTAACACGTTCAGAACACGTCAACGCTCTATCTAGAGATGTTGAATATATTGAATCAAGGGATGTCACAATCACAGGTAGCCGTTGTGGGCTTGCGCCAATCTTCCTTTGGTATGCACTCCAAGAAAGAGGTTTAATAGGACTTAAGAGAGAAGCACAAATGTGCATAACCAATGCGCAACACTTACTGGATAAACTACATGATAACGGTATTGGTGCCATGCGAAATGAGTTTAGTAATACCGTTGTGTTTGAAAGGCCTAAAGATGACTTTGTGCGAAAGTGGAATTTGTCATGTGAAGGAAATGTTGCACATGTGGTCGTGATGCAACATGTCACTATTGAAATGATAGACTCCTTTGTTAGTGAACTTGTTAACAAACGGACCATTTGGTTTCAAGATGGATTGCCTCCTTGCATTGCGAACAACATTGGTGGTGAAAATTGTCCAAGAGGCCTTCCTATCATTGGTAACCTTCATCAACTTGACAGTTTAAATTTCCATTTTCAACTCTGGAACCTCTCAAAGATCTATGGCTTCCCAGTTAATCAAGAATTTAACTATGACGCATTGACACCGTTGTTGCATTATCACTTAAACAATGCTAGCGACCCATTTCTCGGGAGCGGCTATGGTCAAAATTCAGTAGAATTTGAAGTCTGTGTACTTGATTGGTTTGCAAAACTATGGCAGATGGAGAAGGGGGATTATTGGGGATACGTTACAACCGGTGGAACTGAAGGAAATTTACATGGAATTTTAATGGGGATGTACAGAATGCAATGTGTAAAGATCAACACATTAGTCTCGGGCGGGATTGATTGTGCTGATTTAAAGGCTTTACTTCTATTGCACAAGGACAAACCAGCTATCATCAACCTAAACATAGGAACAATTATGAAAGGAGCAATTGATAACATTGATCTCGTAATAGAAACACTTGAGGAATGTGGCTTCCCTCAGGATCGATTCTATATTCATTGCGATGGAGCTCTATCTGGAATAATGTTGCCGTTTCTTAAACGAGTGAAGACTATTAACCTAAATTCTAAGTTTAATCAAAAAAGGGGTTTAATAGGACTTAAGAGAGAAGCACAAATGTGCATAACCAATGCACAACACTTATTGGATAAACTACATGATAACGGTATTGGTGCCATGCGAAATGAGTTTAGTAATACCGTTGTGTTTGAAAGGCCTCAAGATGACTTTGTGCGAAAGTGGAATTTGTCATGTGAAGGAAATGTTGCACATGTGGTCGTGATGCAACATGTCACTATTGAAATGATAGACTCCTTTGTTAGTGAACTTGTTAACAAACGGACCATTTGGTTTCAAGATGGATTGCCTCCTTGCATTGCGAACAACATTGGTGGTGAAAATTGTGCTTGTGCAGTGCATAGCTCATTTTGA 2304 0.3911 MKDMILESLLQSAFKEYLHKEVPKNNMPSAGTEKNWEIQENEGHMNLDITKCFGESRANLSKTIAKYVVKLNQNKSQCLGFPVNQEFNYDALTPLLHYHLNNAGDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGDYWGYVTTGGTEGNLHGILMGREKFQNGILYTSENSHYSLFKIARMYRMQCIKVNTLVSGGIDCADLKALLLLHKDKPAIINLNIGTTMKGAIDNIDLVIETLEECGFPQDRFYIHCDGALSGIMLPFLKQAPRINFKKPIGSISISGHKFLGCPIPCGVILTRSEHVNALSRDVEYIESRDVTITGSRCGLAPIFLWYALQERGLIGLKREAQMCITNAQHLLDKLHDNGIGAMRNEFSNTVVFERPKDDFVRKWNLSCEGNVAHVVVMQHVTIEMIDSFVSELVNKRTIWFQDGLPPCIANNIGGENCPRGLPIIGNLHQLDSLNFHFQLWNLSKIYGFPVNQEFNYDALTPLLHYHLNNASDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGDYWGYVTTGGTEGNLHGILMGMYRMQCVKINTLVSGGIDCADLKALLLLHKDKPAIINLNIGTIMKGAIDNIDLVIETLEECGFPQDRFYIHCDGALSGIMLPFLKRVKTINLNSKFNQKRGLIGLKREAQMCITNAQHLLDKLHDNGIGAMRNEFSNTVVFERPQDDFVRKWNLSCEGNVAHVVVMQHVTIEMIDSFVSELVNKRTIWFQDGLPPCIANNIGGENCACAVHSSF* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1794 767 Gene3D Aspartate Aminotransferase, domain 1 649 738 IPR015422 GO:0003824
Lja6g1794 767 Gene3D Aspartate Aminotransferase, domain 1 339 425 IPR015422 GO:0003824
Lja6g1794 767 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 279 300 IPR021115 GO:0016831
Lja6g1794 767 Gene3D - 97 338 IPR015421 GO:0003824
Lja6g1794 767 PANTHER - 643 764 - -
Lja6g1794 767 PANTHER - 30 446 - -
Lja6g1794 767 PANTHER - 474 647 - -
Lja6g1794 767 Gene3D - 503 554 IPR015421 GO:0003824
Lja6g1794 767 Gene3D - 555 648 IPR015421 GO:0003824
Lja6g1794 767 SUPERFAMILY PLP-dependent transferases 84 423 IPR015424 -
Lja6g1794 767 SUPERFAMILY PLP-dependent transferases 467 736 IPR015424 -
Lja6g1794 767 Pfam Pyridoxal-dependent decarboxylase conserved domain 116 367 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1794 Lja-Chr6 45228577 45239349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1794 63 367 Calmodulin-binding Proteins AT2G02000 22.126 9.33e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1794 K25193 - gmx:100781665 600.127