Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1791 ATGTTTGACTGTGGTGGTGGTTACAAGTCACAGTCTGTGAATGGCCATCGGGAAAAATTTGTGAGGTTTGGTGACTTGGATTCTAGCCTATCTTCATCTTCTGATGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCGTGGAAGTAGTACACCCTCTAGGTCTTTTAAAAGAGGAATGAAAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCTGTATTCCCGGAAGATCTTAAAGTATCAGAGAAGAAGATATTTGATCCTCAAGACAAGTTTTTGCTCTTGTGGAACAAGCTTTTTGTTATCTCATGCATTTTGTCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATTAATGATTCATTACTCTGTCTTGGTATAGACCGGAAGTTAGCAATTATAGTTACCACCTTGAGGACAGTTATCGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGATCCTGCACAGATAGCTAAACGGTACTTACAGCGATATTTCATCATTGATTTCTTATCAGTGTTGCCATTACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTTGCAACCAAGCAGGCCTTGCTTTTCCTTATCTTGCTTCAGTACATTCCTAGATTTCTCCGGATGGTACCATTAAGTTCGGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCTTGGGCAGGTGCTGCAAATTATTTGCTATTGTTCATGCTTGCCAGTCATATAGTTGGATCTTTTTGGTACTTGTTAGCTGTTGAACGCAACGACTTTTGCTGGCAGAAGGCTTGTAGTGATGATGGATACAACAAGAAATTCTTGTACTGTGGCAACCAATACATGGAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGCTATTCTTACATCACAGTGCTCTGCAGATGATGATAATCCACCTTTTGACTATGGAATTTTCCAACAAGCCTTGTCATCCGGTATTGTTTCATCTAAGAAGTTCTTTTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACTCTTGGCCAAGGGCTTCAAACTAGCACTTATACTGGGGAGATTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACTTATCTCCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAATCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTCAGAGAGCGTGTGAGACGATATGATCAATATAAGTGGTTAGCAACACGTGGTGTAGATGAAGAAATTTTAGTTCAGAGTCTCCCAAAGGATCTTCAAAGAGACATTAAGCGTCACCTCTGCCTAGCTTTAGTTAGAAGGGTTCCACTATTTGAGAACATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCAAGTTTATTTACGGAGAGTACTTATATTGTCCGGGAAGGAGATCCAGTTGATGAAATGCTTTTCATCATACGAGGCCGCCTTGAGAGTGTCACCACAGATGGTGGGAGAAGTGGATTTTTTAATCGCAGTTTTTTAAAAGAGACTGACTTTTGTGGTGAGGAGCTTTTAACCTGGGCACTGGATCCCAAAACTGGCTCTAACCTCCCGTCATCTACTCGAACAGTTAAGGCTTTAACAGAAGTTGAGGCTTTTGCTTTAACTGCTGAAGAGCTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGCAGACAGGTTCAGCACACCTTCCGCTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTCATTCAAGCAGCATGGCGTCGCTATTCCAAAAGGAAAATTATGGAGCTTCATCGAAAGGAAGAATCAGAGGAGTCAGAAGGAACCCGCAGCAATGCTGGTGGCAGTTCATACAGCCTTGGTGCCACCATCTTGGCCTCAAGATTTGCCGTGAATGCTCTTCGTGGGGTGCATCGCAATCGGAATGCTAAGACTGCTAGGGAGTTGGTCAAACTACAGAAACCTCCAGAGCCTGACTTTACTGCTGATGATATGTAA 2202 0.4269 MFDCGGGYKSQSVNGHREKFVRFGDLDSSLSSSSDAGVKTCGFSIDKLSHGGRGSSTPSRSFKRGMKKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILSVSVDPLFFYLPVINDSLLCLGIDRKLAIIVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLQRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKQALLFLILLQYIPRFLRMVPLSSELKRTAGVFAETAWAGAANYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDDGYNKKFLYCGNQYMEGYSAWQNRSKAILTSQCSADDDNPPFDYGIFQQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYTGEIIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEEILVQSLPKDLQRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPSLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKETDFCGEELLTWALDPKTGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKIMELHRKEESEESEGTRSNAGGSSYSLGATILASRFAVNALRGVHRNRNAKTARELVKLQKPPEPDFTADDM* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1791 733 Pfam Cyclic nucleotide-binding domain 529 618 IPR000595 -
Lja6g1791 733 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 14 730 - -
Lja6g1791 733 SUPERFAMILY cAMP-binding domain-like 437 627 IPR018490 -
Lja6g1791 733 CDD CAP_ED 507 638 IPR000595 -
Lja6g1791 733 Gene3D Helix hairpin bin 435 498 - -
Lja6g1791 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 14 730 - -
Lja6g1791 733 SUPERFAMILY Voltage-gated potassium channels 102 429 - -
Lja6g1791 733 SMART cnmp_10 507 638 IPR000595 -
Lja6g1791 733 Gene3D - 114 432 - -
Lja6g1791 733 ProSiteProfiles cAMP/cGMP binding motif profile. 507 637 IPR000595 -
Lja6g1791 733 Gene3D Jelly Rolls 505 625 IPR014710 -
Lja6g1791 733 MobiDBLite consensus disorder prediction 713 733 - -
Lja6g1791 733 ProSiteProfiles IQ motif profile. 643 672 IPR000048 GO:0005515
Lja6g1791 733 Pfam Ion transport protein 110 433 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1791 Lja-Chr6 45203398 45208682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1791 1 732 Ion Channels AT2G23980 75.733 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1791 K05391 - gmx:100820202 1303.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1791 6 45203398 45208682 Lja6g1791 6 45203398 45208682 ECH