Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1787 ATGTTGATGGCATTCCAAACCAAGGGTCTATTGTTGTTCCTGTGTGCATTAATCTTTTCATTTTCATGCATTCTTGCTTCTTCTGTGCCAAAGGAGCAAGAGCTAGATCGAATCTCGGCTCTCCCGGGGCAGCCGCCGGTGACATTTGCTCAGTTCTCAGGCTATGTCACTGTCAATGAAGAACATGGACGAGCACTCTTCTACTGGTTCACTGAGGCCACCACTTCCCCTCAGAATAAACCTCTTGTTCTCTGGCTCAATGGAGGACCAGGTTGCTCATCGGTGGCATATGGGGCATCAGAAGAAATTGGTCCATTCCGTATAAACAAGACTGGCTCCTCTCTCTTCCTTAACAAATATGCATGGAATAAAGAAGCAAATATCCTGTTTCTTGAATCGCCTGCTGGTGTTGGTTTCTCATACACGAATACCAGTTCTGACCTCACAACTTCTGGGGACAAAAGGACAGCACAGGATGCTTTGATTTTTCTACTTAGATGGATGGCCAGATTTCCACAATATAAATACAGGGAGTTTTACATTGCTGGGGAGAGCTATGCAGGGCATTATGTCCCCCAGTTGGCTAAGAAAATCCATGATTACAATAAACAAAATCCTCATATCCTTAATCTTAAAGGTTTCATTGTGGGAAATGCTGTGACTGATGACTACTATGATGGAGTTGGAACTGTTACGTATTGGTGGAGCCATTCTATGATCTCTGATCACTCATACAACTCTATCCTTAAATACTGCAATTTCACAGAAAGAAAAACAACTAAAAAATGTGACGATGCTGTGGGTTATGCGATTAACCATGAAATGGGAAACATTGATCAGTACAGTATCTACACTCCTGCATGCCCAACACCACATGACAATAGCACTGCAAGGCACGTTAGGCCCAAGAGCTCAATTTTACATAGGATTTCTGGGTATGATCCATGTACTGAAAATTATGCAGAGAAATATTACAATCGCTATGATGTGCAGAAAGCAATGCATGCAAATGTCACAAACATTCCTTACAAATGGACTGCTTGCAGTGATGTGCTCAATAAACATTGGAAGGATTCTGAAGTTTCTATATTGCCCATATACAAAGAGTTAATTGCAGCTGGTTTGAGAATCTGGGTTTTCAGTGGAGACACAGATTCAGTGGTTCCAGTAACTGCCACAAGGTTTTCTCTCAACCATCTGAACCTCGCCATCAAAACTCGTTGGTATCCATGGTACTCAGGGGTACAGGTAGGAGGGTGGACAGAGGTATATAATGGACTAACATTTGCCACAGTGAGAGGAGCTGGGCATGAAGTACCATTGTTTCAGCCAAAGAGAGCTTACATACTCTTCAGGTCGTTTTTGGCAGGGAAAGAGCTGCCAAAATCTTGA 1392 0.4282 MLMAFQTKGLLLFLCALIFSFSCILASSVPKEQELDRISALPGQPPVTFAQFSGYVTVNEEHGRALFYWFTEATTSPQNKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLFLNKYAWNKEANILFLESPAGVGFSYTNTSSDLTTSGDKRTAQDALIFLLRWMARFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKQNPHILNLKGFIVGNAVTDDYYDGVGTVTYWWSHSMISDHSYNSILKYCNFTERKTTKKCDDAVGYAINHEMGNIDQYSIYTPACPTPHDNSTARHVRPKSSILHRISGYDPCTENYAEKYYNRYDVQKAMHANVTNIPYKWTACSDVLNKHWKDSEVSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLAIKTRWYPWYSGVQVGGWTEVYNGLTFATVRGAGHEVPLFQPKRAYILFRSFLAGKELPKS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1787 463 Pfam Serine carboxypeptidase 43 456 IPR001563 GO:0004185|GO:0006508
Lja6g1787 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Lja6g1787 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Lja6g1787 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Lja6g1787 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Lja6g1787 463 SUPERFAMILY alpha/beta-Hydrolases 36 460 IPR029058 -
Lja6g1787 463 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Lja6g1787 463 Gene3D - 363 457 - -
Lja6g1787 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 427 444 IPR033124 GO:0004185
Lja6g1787 463 Gene3D - 316 353 - -
Lja6g1787 463 Gene3D alpha/beta hydrolase 32 290 IPR029058 -
Lja6g1787 463 PANTHER SERINE CARBOXYPEPTIDASE 24 17 462 - -
Lja6g1787 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 462 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1787 Lja-Chr6 45138472 45144340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1787 321 460 Calmodulin-binding Proteins AT2G22960 31.915 1.84e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1787 K16297 - gmx:100785391 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1787 6 45138472 45144340 Lja6g1787 6 45138472 45144340 ECH