Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1780 ATGGAAGCCAGTGCTGGACTGGTCGCCGGGTCACATAACCGCAATGAACTTGTGGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGCCAAGTGTGTGAGATTTGTGGGGATGGCGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGAAGCCAGAACTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGTCCACGAGTGGAAGGAGATGATGATGAAGAGGATGTGGATGACATTGAGCATGAGTTCAACATAGATGATCAAAAGAACAAGCAGGTCAATGTTGTAGAAGCCTTGCTTCATGGGAAGATGAGCTATGGAAGAGGTCTTGAAGATGATGAGAACTCCCAGTTCCCACCTGTAATTTCTGGCGGCCGTTCTCGACCTGTAAGTGGAGAATTTCCAGTAGGATCACATTATGGGGAGCAGATGTTATCTTCTTCACTGCATAAACGAATCCATCCATATCCTATGTCTGAATCTGGAAGTGTAGCATGGGATGAAAAGAAAGAGGAAGGATGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGAAATTTGGGGCCTGAAGCTGATGAAGATACTGATGCATCTATGCTAGATGAAGCAAGGCAACCACTGTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATACAGGATGGTGATTGTGGCAAGGCTTGTTATTCTTGCTTTCTTCCTAAGATACAGGATTCTGAACCCGGTACATGATGCACTGGGGCTATGGCTAACCTCTATCATTTGTGAGATCTGGTTTGCATTTTCATGGATTCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGCGAGACCTACCTTGATCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCAGTAGATTTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACCATTCTCTCCATCTTGGCCGTGGATTACCCAGTTGATAAGGTATCATGCTACATCTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCACTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTGCCATTCTGTAAGAAATTTTCTATAGAACCTCGAGCACCTGAGATGTACTTCAGTGAGAAAATTGACTATCTTAAGGACAAAGTTCAACCAACCTTTGTTAAAGAGCGTCGAGCAATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCACAGAAGGTTCCTCCAGAAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGGAACAACACTAAGGATCATCCAGGGATGATTCAAGTTTTTCTTGGAAACAGTGGAGGTGTTGATACTGAAGGAAATCAGCTTCCTCGCCTTGTTTATGTTTCGAGAGAGAAAAGGCCTGGTTTTCAACATCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTCTCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAACAGCAAGGCTGTCAGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACTGGGAAGAAGGTTTGCTATGTTCAGTTTCCTCAGAGATTTGATGGCATAGATACTCATGATCGTTACGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAAGGTCCTGTATATGTCGGCACAGGGTGTGTTTTTAGGAGGCAAGCTTTATATGGATATAATCCTCCCAAGGGTCCCAAGAGACCGAAAATGGTAAGCTGTGACTGCTGCCCTTGTTTCGGAAGCCGCAAGAAGCTTAAGCATGCTAAGAGTGATGTAAATGGAGAGGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAAGTGCTCATGTCCCAGATGAACTTTGAAAAGAAATTTGGACAGTCTTCTATATTTGTGACTTCCACCTTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCTGGCATGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGGTTGGCTGGATTTATGGATCTATCACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGGGGGTGGAGGTCCATTTACTGCATGCCAAGGAGAGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATCGGCTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATATTCTTCAGTCACCATTGCCCTTTATGGTATGGCTACAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCCAACACAACTATCTACCCCTTCACCTCCATCCCTCTTGTTGCCTACTGTGTTCTTCCTGCAGTTTGCTTACTCACTGACAAGTTCATCATGCCTCCGATAAGCACTTTTGCTGGTTTGTACTTTATTGCTCTCTTCTCTTCAATCATTGCAACGGGTGTTATTGAGCTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTTATACAAGGTCTTCTGAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAACAGATGATGAAGACTTCGGCGAATTATATGCAATTAAGTGGACTACCCTCCTAATTCCTCCAACCACTATCTTAATCATCAATATTGTTGGTGTTGTTGCTGGAGTCTCAGATGCCATAAACAATGGCTACCAATCCTGGGGACCACTATTTGGGAAGCTCTTCTTTTCCTTCTGGGTGATTGTCCATCTCTATCCATTCCTCAAAGGTTTGATGGGTCGGCAGAACCGCACGCCGACCATTGTCGTGATTTGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTGTGGGTGAGAATTGATCCATTTGTCCTTAAGACTAAGGGACCTGACACCAAGCTATGTGGAATCAACTGCTGA 3117 0.4488 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKQVNVVEALLHGKMSYGRGLEDDENSQFPPVISGGRSRPVSGEFPVGSHYGEQMLSSSLHKRIHPYPMSESGSVAWDEKKEEGWKDRMDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDFFVSTVDPMKEPPLVTANTILSILAVDYPVDKVSCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGNSGGVDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKLKHAKSDVNGEAASLKGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAGMLKEAIHVISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHCRGWRSIYCMPRRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGYKEKKLKWLERFAYANTTIYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFIALFSSIIATGVIELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEDFGELYAIKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1780 1038 SUPERFAMILY RING/U-box 21 107 - -
Lja6g1780 1038 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Lja6g1780 1038 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 824 IPR029044 -
Lja6g1780 1038 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Lja6g1780 1038 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 457 621 IPR029044 -
Lja6g1780 1038 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Lja6g1780 1038 Coils Coil 428 448 - -
Lja6g1780 1038 Pfam Cellulose synthase 330 1032 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja6g1780 1038 MobiDBLite consensus disorder prediction 136 156 - -
Lja6g1780 1038 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1038 - -
Lja6g1780 1038 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1038 - -
Lja6g1780 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1780 Lja-Chr6 45064840 45070638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1780 1 1038 Cell Wall Biosynthesis AT5G17420 85.178 0.0 1837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1780 K10999 - gmx:100815436 2029.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1780 6 45064840 45070638 Lja6g1780 6 45064840 45070638 ECH
Lja6g1780 6 45064840 45070638 Lja4g1999 4 20596417 20600656 PCT