Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1779 ATGGAGGCTAGTACTAGACTATTTGCAGGGTCTCATAACAGCAATGAGCTTGTGGTGATCCAAGGAAATGATGAGCCTAAGCAAGTGAAAAACTTAGATGGACAGCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGACGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGCTTCCCGGTATGCAGGCCGTGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGGTTGCCCTCAGTGCCATACAAGATACAAGCGAATCAAAGGAAGCCCAAGAGTGTCTGGAGATGAAGATGAAGATGATGTGGATGATATTGAACAGGAATTTAAAATGGAAGAAGAAAAGTACAAGCTCAAGCAAGAAGAGATGCTGCAAGGGAAGATGAAACATGGAGATGATGATGAGAATGCTAAACCATTACTGGTGAATGGGGAGCTGCCCATATCTTCTTACAGCATTGTAGAACCTGGTGGTGAAAAATTGGATGACAAGGAGAAAACAGATGACTGGAAGTTGAATCAAGGCAACCTATGGCCTGAAACTGCTGCCCCAGTTGATCCTGAAAAGAACATGAATGATGAAACAAGACAGCCACTCTCAAGGAAAGTAGCAATACCTTCAGGCAGACTCAGTCCCTATAGAATGATGGTGGTGACTCGGCTCCTCCTTCTACTACTCTTCATTCAGTATAGAATATTCCACCCAGTGCCCGATGCAATTGGACTCTGGTTAATTTCTGTAGTATGTGAAATCTGGCTTACATTGTCATGGATAGTTGATCAGCTTCCCAAATGGTTTCCCATTGACCGCGAGACATACCTTGATCGCCTTTCAATCAGGTTTGAACCGGAGAACAAGCCGAATATGCTATCTCCTGTTGATATCTTTGTCACAACTGTAGATCCAATAAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCCTTGGATTATCCTGCTCACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAGGAAACTGCTGAATTTGCTCGAAAGTGGGTACCTTTTTGCAAAAAATTCTCTGCAGAACCTCGAGCACCAGAGAGGTACTTCTCACAGAAGATAGATTTTCTGAAGGATACGCTTCAGTCCACTTATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTAGCAAAATCCTTGAGAGTTCCCCCAGAAGGTTGGACTCTGAAAGACGAGACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGCATGATACAAATCCTTCTTGGTCATAGTGAAGGCCATGAAGGTAATGAGCTTCCATGTCTTATCTACATTTCTCGAGAGAAAAGGCCAGCATTTCAGCATCATAGCAAAGCTGGTGCAATGAACGCCTTGCTTCGTGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTGCGAGAAGCTATGTGTTTCTTTATGGACATACAATTTGGGAATAGCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTTGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCAAGATGGACTTCAGGGACCTGCTTATATTGGCTCAGCATGTATCTTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCCAAAGGCTTCAAAACGCCAACGAGAAGTACAAGTGCACTCAAAACAGGATGAAAGTGGAGAGGATGGAAGCATAAAAGAAGCAACAGATGAAGACAAGCAGCTATTGAAGTCACATATGAATGTTGAAAATAAATTTGGGAACTCTACACTTTTTATGAATTCTTCATTAACAGAAGAAGGTGGTGTTGATCCATCTTCAAGTCAGGAAGCTCTGCTTAAAGAAGCCATTCATGTCTTGAGTTGTAGATATGAAGATAGAACTCTCTGGGGATATGAGGTAGGTTTGAGCTATGGATCTATAGCAGCAGATGTTCTTACAAGTTTGAAGCTGCATTCTCGTGGCTGGAGATCTGTATACTGCATGCCAAAGAGAGCAGCATTCAGAGGCACAGCTCCTATCAACCTTACCGAACGACTTAATCAGGTGCTCAGATGGGCAGTGGGATCACTTGAGATCCTATTCAGCCGCCATTGCCCGATATGGTATGGCTTCAAGGAAGGAAGACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATATTGTCTCATTCCTGCCATTTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGACACTTTTGCAAGTATGATCATCATTTCCCTGTTCATCTCAATCTTTGGATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCTAGAGGAGTGGTGGAGAAGTCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCACACCTCTTTGCCGTTGCACAAGCCCTTATGGGAGGCCTGGCTAAAAAAGTCAACAAAAACTTCAGTGTTGTATCCAAGGCCCCGGATGATGAAGAGTTTCATGAACTCTACACCATAAGATGGACAGCACTGCTAGTACCTCCAACCACAATCATAATAATCAACCTCATTGGTGTTGTAGCTGGTTTCACAGATGCCATAAACAGTGGTGCACATTCTTATGGAGCACTGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTCATCTCTATCCCTTCCTTAAAGGTTTGATGGGTAGGCAGAACAGGACACCTACTCTTATTGTCATATGGTCTGTGCTTTTGGCTTCTATCTTCTCATTGGTTTGGGTAAGGCTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTAAAGCAATGTGGAATCAGTTGCTGA 2973 0.4302 MEASTRLFAGSHNSNELVVIQGNDEPKQVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQGCPQCHTRYKRIKGSPRVSGDEDEDDVDDIEQEFKMEEEKYKLKQEEMLQGKMKHGDDDENAKPLLVNGELPISSYSIVEPGGEKLDDKEKTDDWKLNQGNLWPETAAPVDPEKNMNDETRQPLSRKVAIPSGRLSPYRMMVVTRLLLLLLFIQYRIFHPVPDAIGLWLISVVCEIWLTLSWIVDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPVDIFVTTVDPIKEPPLVTANTVLSILALDYPAHKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSAEPRAPERYFSQKIDFLKDTLQSTYVKERRTMKREYEEFKVRINALVAKSLRVPPEGWTLKDETPWPGNNTKDHPSMIQILLGHSEGHEGNELPCLIYISREKRPAFQHHSKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQFGNSIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCQDGLQGPAYIGSACIFRRKALNGFDPPKASKRQREVQVHSKQDESGEDGSIKEATDEDKQLLKSHMNVENKFGNSTLFMNSSLTEEGGVDPSSSQEALLKEAIHVLSCRYEDRTLWGYEVGLSYGSIAADVLTSLKLHSRGWRSVYCMPKRAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPIWYGFKEGRLKGLQRIAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVDTFASMIIISLFISIFGSAILELRWSGVSLEEWWRSQQFWVIGSVSAHLFAVAQALMGGLAKKVNKNFSVVSKAPDDEEFHELYTIRWTALLVPPTTIIIINLIGVVAGFTDAINSGAHSYGALLGKLFFSLWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRLDPFVLKTKGPDVKQCGISC* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1779 990 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 434 585 IPR029044 -
Lja6g1779 990 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 284 391 IPR029044 -
Lja6g1779 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Lja6g1779 990 SUPERFAMILY RING/U-box 22 105 - -
Lja6g1779 990 MobiDBLite consensus disorder prediction 179 200 - -
Lja6g1779 990 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Lja6g1779 990 SUPERFAMILY Nucleotide-diphospho-sugar transferases 307 808 IPR029044 -
Lja6g1779 990 Coils Coil 393 413 - -
Lja6g1779 990 Pfam Cellulose synthase 295 984 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja6g1779 990 Coils Coil 104 124 - -
Lja6g1779 990 MobiDBLite consensus disorder prediction 585 613 - -
Lja6g1779 990 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Lja6g1779 990 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 14 990 - -
Lja6g1779 990 PANTHER CELLULOSE SYNTHASE 14 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1779 Lja-Chr6 45052349 45057579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1779 1 990 Cell Wall Biosynthesis AT5G17420 64.854 0.0 1385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1779 K10999 - gmx:100777270 1665.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1999 4 20596417 20600656 Lja6g1779 6 45052349 45057579 PCT