LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g1773	ATGGAGGATAACCACCAAATCATCAATTTTGCTCCTTCTTCTTCTTCCTCATCTTCTGTGATGTCTCTGAAAAAATATGATGTTTTTCTTAGCTTTCGCGGTAAAGATACTCGGGACAACTTCACCAGCCATCTTTATGATGCTCTCCAAAAGGAAGTGGAGACCTACATAGATTACAGGCTTGAGAAGGGAGATGAGATCTCACAAGCACTCATCAAAGCCATACAAGACTCACTTGTATCTGTTGTCATCTTCTCTGAAAACTATGCTTCCTCCAAGTGGTGTTTGGATGAGATCAGCATGATTCTTGAATGCAAGAGGGATCATGGACAAATTGTAATACCTGTGTTCTATAAAGTAGATCCTTCAGATGTGAGGAAGCAGACAGGGAGCTACAAGGAAGCTTTTGCAAAGCACGAGCAACGTCTCAAAAACAGTGATGATGACAAGTTGCAGAAATGGAGATGTGCCCTCAATGAAGCAGCCAATTTGGCAGGGTGGGACTCTCGGACTTATAGGAATGAATCTGAATTCATCAAGGACATTCTTAAAGATGTTATCAAAAAGCTGGAAATTAGATCCCCAATTGAATTGAAGGGAGTTGTTGGAATAGAGGAAAATTATGCAAAGGTTGAGTCATTATTGGAAATTGGCTCAACAGAAGTTCGAGTGATTGGAATATGGGGCATGGGTGGCGTAGGTAAGACCACCCTGGCTTGTGCTTTGCATGCCAAGTTGTTTTCTCAATTTGAAGGTCATTGTTTTCTCAAAAATGTGAGGGAACAATCAGAAAAGAATGGTTTAGATGCCTTGCGCAATAGACTTTTTTCTGACTTGTTAGGAGAAGAAAATCTTTGTGTTGAGCCCCATTTTGTGACGAGGAAGCTCAGACGTAAAAAAGTTTTTATTGTTTTGGATGATGTGGCTACCTCAGAACAGTTAGATGATCTCATCAGTGATTATGATTGTTTGGCACAGGGAAGTAGAGTGATTGTAACAACTAGAGACAAACACATATTCAGCCTTGTGAATGATATATATGAGGTTAAGGAACTGAGTTACCATGCCTCTCTTCAACTTTTCTGCTTGACTGCCTTCAGAGAAAAGCGTCCCAAAAATGGATTTGAAGAACTATCAAAAAGTGTGATCGCATATTGCAAAGGCAACCCTTTGGCTTTAAAAGTCTTAGGTGCACGACTTCGATCAAGAAGTATTGAAGCATGGAAAAGTGAATTAAGAAAGCTCCAAAAGATTCAAGATGTGAAAATTCATAATGTGTTAAAATTGAGTTTTGATGGCTTGGATTCTGATGAGAAAGACATATTTCTAGACATTGCATGTTTCTTAAAAGGAGAACCTAGAGAACATATAACAAGTCTACTAGATGCTTGTGGTTTCTCTGCTGCTGTTGGGATAGAAGAACTGATAGATAAGTCTCTTATAACTATTTCATATTTTAATAGAATAGAGATGCATGACTTGATACAAGAAATGGGCCAGAATGTTGTTCGCCAAGAATCTCATAAAGACCCTGGAAGAAGAAGTCGATTGTGGGATCCTGAGGAAGTGTATGATGTATTGAAAAATAACAAGGGAACTGAAGCGGTCGAATGCATAATTTTAGATGTGTCTAAAGTTAAGGATCTACATTTGAGCTTTAATTCTTTTACAAAAATGACTGAAATGAGATTTCTTAAATTCTATTCTTCTATACCGAGTGAAGGATGTAAGATATACCTCCCCAGCGGTCTTGAGTCATTGTCTAAAAAATTGAGGCGCCTTGAATGGCCTGGGTACTGTTTGGAGTCTTTACCATCAACCTTTTGTGCTGAAATGCTTGTTAAGCTTGTCATGCCAGACAGCAACATTCAAAAGCTTTGGGATGGAGTTCAGAATGTTGTGAATTTAAAGACAATTGATCTTCAATGCTCTAGACACCTGGTTGAGCTCCCAGACTTATCTATGACCACAAATCTCGAAGTATTATCTCTTGATCAGTGTATAAGTTTGCGTGATGTTCATCCATCCATTTTTTCACTCCACAAGCTTTGGCATCTGGGTTTACAATACTGCACAGAGATTGAAAGCCTTGAAAGTAACGTCCATTTAAAATCTATCCGCAGTTTCGATCTCACGAACTGCTCATCCCTGAAGAAATTCTCAGTCTTCTCAGAGAAATTGCAGACAGTGTGGTTAGAACGCACAAGCATCCAGAAATTACCCTCATCAATTTGGAATTGTAAGGAACTTCATCATATGACTCTAAGGGACTGCTACAATCTTGAGAGTTTTGGGATTGGGAGCAAGTCAGCTCATGATCCGGTAAACGCATCTCTTCGCCATCTAGACCTTTCTGGATGCAAATTACTAAATGAATTCCATTTATGTTTAATCCTTGATGGTATGCGGTCTTTAAATGAATTGAATTTGGAAAATTGTTGCAACTTACAAGCACTCCCTGACACCATTGGCTCGTCAACAAGATTAGAGCGCTTATACCTAAGTGGAAGCAATGTTGAGATGTTGTCTCCAAATATCAAGAACCTTTTGAATCTACGAGAGCTTTGGTTAGACGAATGTAGGAAACTTGTGTCTCTTCCAGAGCTTCCACCTTCCCTGCACATGTTAAGTGCTATTAACTGCACATCTTTGCACACAGACATCACTCATTTGGTAACAGTGGTACAACACAACATACCTGTCAGATTTTATGATGGACCTTCAGGACGTCCTCCATATGTTGTAATCCCTGGAGACCAAGTTCCGGACATGTTTATCTTTTGTGCTGAAGGGGATTCAATAACGTTTCCGCAACTTCCACAATCTGGCATTTGCGGGCTTTATTTGTTGCCTCGTTCTTTCTCATCTACCTCCAGGGAGCTACTGTGGAGATGTCAAGTGTTGTATCAACAAACGTTCCACCTTTGA	2928	0.3965	MEDNHQIINFAPSSSSSSSVMSLKKYDVFLSFRGKDTRDNFTSHLYDALQKEVETYIDYRLEKGDEISQALIKAIQDSLVSVVIFSENYASSKWCLDEISMILECKRDHGQIVIPVFYKVDPSDVRKQTGSYKEAFAKHEQRLKNSDDDKLQKWRCALNEAANLAGWDSRTYRNESEFIKDILKDVIKKLEIRSPIELKGVVGIEENYAKVESLLEIGSTEVRVIGIWGMGGVGKTTLACALHAKLFSQFEGHCFLKNVREQSEKNGLDALRNRLFSDLLGEENLCVEPHFVTRKLRRKKVFIVLDDVATSEQLDDLISDYDCLAQGSRVIVTTRDKHIFSLVNDIYEVKELSYHASLQLFCLTAFREKRPKNGFEELSKSVIAYCKGNPLALKVLGARLRSRSIEAWKSELRKLQKIQDVKIHNVLKLSFDGLDSDEKDIFLDIACFLKGEPREHITSLLDACGFSAAVGIEELIDKSLITISYFNRIEMHDLIQEMGQNVVRQESHKDPGRRSRLWDPEEVYDVLKNNKGTEAVECIILDVSKVKDLHLSFNSFTKMTEMRFLKFYSSIPSEGCKIYLPSGLESLSKKLRRLEWPGYCLESLPSTFCAEMLVKLVMPDSNIQKLWDGVQNVVNLKTIDLQCSRHLVELPDLSMTTNLEVLSLDQCISLRDVHPSIFSLHKLWHLGLQYCTEIESLESNVHLKSIRSFDLTNCSSLKKFSVFSEKLQTVWLERTSIQKLPSSIWNCKELHHMTLRDCYNLESFGIGSKSAHDPVNASLRHLDLSGCKLLNEFHLCLILDGMRSLNELNLENCCNLQALPDTIGSSTRLERLYLSGSNVEMLSPNIKNLLNLRELWLDECRKLVSLPELPPSLHMLSAINCTSLHTDITHLVTVVQHNIPVRFYDGPSGRPPYVVIPGDQVPDMFIFCAEGDSITFPQLPQSGICGLYLLPRSFSSTSRELLWRCQVLYQQTFHL*	976

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g1773	975	Pfam	TIR domain	25	193	IPR000157	GO:0007165
	Lja6g1773	975	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	167	IPR035897	-
	Lja6g1773	975	Pfam	Leucine Rich Repeat	613	631	IPR011713	-
	Lja6g1773	975	PRINTS	Disease resistance protein signature	224	239	-	-
	Lja6g1773	975	PRINTS	Disease resistance protein signature	386	400	-	-
	Lja6g1773	975	PRINTS	Disease resistance protein signature	295	309	-	-
	Lja6g1773	975	PRINTS	Disease resistance protein signature	701	717	-	-
	Lja6g1773	975	Pfam	NB-ARC domain	212	421	IPR002182	GO:0043531
	Lja6g1773	975	SUPERFAMILY	L domain-like	491	881	-	-
	Lja6g1773	975	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	947	IPR044974	GO:0006952
	Lja6g1773	975	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	445	IPR027417	-
	Lja6g1773	975	Gene3D	Ribonuclease Inhibitor	496	725	IPR032675	-
	Lja6g1773	975	Gene3D	Ribonuclease Inhibitor	726	898	IPR032675	-
	Lja6g1773	975	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	18	947	-	-
	Lja6g1773	975	Gene3D	-	22	190	IPR035897	-
	Lja6g1773	975	Gene3D	-	191	349	IPR027417	-
	Lja6g1773	975	Gene3D	-	351	435	IPR042197	-
	Lja6g1773	975	ProSiteProfiles	TIR domain profile.	24	190	IPR000157	GO:0007165
	Lja6g1773	975	SMART	till_3	25	164	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g1773	Lja-Chr6	44965323	44970159	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g1773	4	862	WRKY Transcription Factor Family	AT4G12020	32.123	2.94e-112	379

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g1773	-		-	gsj:114410062	1176.77