Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1770 ATGGCCCAATCTGAGTGGTCTCAAATTTTGGCCATAGCCATAGTTGCCACCCTTTTACTATGCATCAATTTTGCAACATCATCAGACCCATTTGTTCACCAACACCATGACAAGGTTGGTAGGCTCCCTGGTCAAAACTTCAACACCAGCTTTGCACACTATTCTGGCTACATCACGGTCAATGACAAAGCTGGGAGAGCACTCTTCTACTGGCTCTGTTACTACTTACTATTGGGATTGGAATGTAACAAAAATTCTTGTTGGGATATTTCAGGACCTGGATGTTCGTCCATTGCTTATGGGGAGGCAGAAGAAATTGGCCCTTTTCATATAAAGCCAGATGGCAAGACCCTTTATCTCAATCCGTATGCTTGGAATCAAGTTGCCAACATTCTTTTTGTCGACGCTCCTGCTGGAGTTGGATTTTCCTATTCAAATACTTCATCTGACTTGCTAAACCATGGCGATAAGAAGACAGCTGAGGACTCTCTGATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGGAAGAGACTTCTTTATTAGCGGCGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGTTATTGTGAAGCACAACACAGCTTGTAAAGAAATTGCTATAAATCTGAAAGGTTACATGGTGGGAAATGCTCTGTTAGATGATTACCATGATCAACTGGGCATGTACCAGTTCATGTGGTCAAGTGGTATGATTTCAGATGAAACATACAAGCTCTTGAACCTGCTATGTGATTCTCAGTCAGTCCTACACCCATCACATTCATGTGAAAAAAATTCTGAAATTGCTGATAAAGAAGTTGTCAATATAGATCCATACAGTATCTTTACTCCTACTTGCCATGCTAATGCTAGCCAGTCAAATCAGACAAGATTTGGTAGACTCGGTGCTGGGTATGATCCTTGCACAGAGAAGCACTCCACTATATACTTCAATCTACCTGAGGTCCAAAGGATTCTTCATGTTGATCCAAATCATAAGCCTGCTAAATGGGAGACCTGCAGTGAAGTGATAAATACCCACTGGAAGGATTCTCCAAGAACGGTGCTCAATGTTTTTCGAGAACTTATTAATTCGGGACTGCGGATATGGGTTTTCAGTGGTAATACAGATGCAGTACTCCCAGTAACATCTACTCGCTATAGCATAGATGCTCTCAAGCCTCCAACTGTGAGCCCCTGGCGTCCATGGTATGATGAGGAGGAGGTAGGAGGATGGACTCAAGAATATGCTGGACTCACGTTTGTAACTGTAAGGGGTGCAGGGCACGAAGTTCCTCTGCACAGACCAAAACTTGCTCTGACATTGCTCAAATCCTTCTTAGCAGGAACCTCCATGCCCAAGCTCGAGCTACTCAGCGCCTCGTGA 1404 0.4352 MAQSEWSQILAIAIVATLLLCINFATSSDPFVHQHHDKVGRLPGQNFNTSFAHYSGYITVNDKAGRALFYWLCYYLLLGLECNKNSCWDISGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYAWNQVANILFVDAPAGVGFSYSNTSSDLLNHGDKKTAEDSLIFLLKWFERFPQYKGRDFFISGESYAGHYVPQLSQVIVKHNTACKEIAINLKGYMVGNALLDDYHDQLGMYQFMWSSGMISDETYKLLNLLCDSQSVLHPSHSCEKNSEIADKEVVNIDPYSIFTPTCHANASQSNQTRFGRLGAGYDPCTEKHSTIYFNLPEVQRILHVDPNHKPAKWETCSEVINTHWKDSPRTVLNVFRELINSGLRIWVFSGNTDAVLPVTSTRYSIDALKPPTVSPWRPWYDEEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLLKSFLAGTSMPKLELLSAS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1770 467 Gene3D - 361 455 - -
Lja6g1770 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 461 IPR001563 GO:0004185|GO:0006508
Lja6g1770 467 Pfam Serine carboxypeptidase 43 454 IPR001563 GO:0004185|GO:0006508
Lja6g1770 467 Gene3D alpha/beta hydrolase 33 294 IPR029058 -
Lja6g1770 467 Gene3D - 314 352 - -
Lja6g1770 467 SUPERFAMILY alpha/beta-Hydrolases 40 458 IPR029058 -
Lja6g1770 467 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 29 10 461 - -
Lja6g1770 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Lja6g1770 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Lja6g1770 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Lja6g1770 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Lja6g1770 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Lja6g1770 467 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1770 Lja-Chr6 44923146 44937614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1770 341 458 Calmodulin-binding Proteins AT2G22960 26.050 1.09e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1770 K16297 - zju:107426294 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1770 6 44923146 44937614 Lja6g1770 6 44923146 44937614 ECH