Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1769 ATGGCCCAATCTGAGCGGTCTCAAATTTTGGCCATAGCCATAGTTGCCACCCTTTTCCTATGCATCAATTTTGCAACATCATCAGACCCATTTGTTCAGCAACACCATGATAAGGTTGGTAGGCTCCCTGGTCAAAACTTCAACACCAGCTTTGCACACTATTCTGGCTACATCACGGTCAATGACAAAGCTGGGAGAGCACTCTTCTACTGGTTCATGGAGGCTGATCAAGATCCTCAATCCAAACCCCTTGTTTTATGGCTAAATGGAGGACCTGGATGTTCGTCCATTGCTTATGGGGAGGCAGAAGAAATTGGCCCTTTTCATATAAAGCCAGATGGCAAGACCCTTTATCTCAATCCTTATGCTTGGAATCAAGTTGCCAACATTCTTTTTGTCGACGCTCCTGCTGGAGTTGGATTTTCCTATTCAAATACTTCATCTGACTTGCTAAACCATGGCGATAGGAAGACAGCTGAGGACTCTCTGATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGGGAGAGACTTCTTTATCACCGGTGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGTTATTGTGAAGCACAACACAGCTTGTAAAGAAAATGCTATAAATCTGAAAGGTTACATGGTGGGAAATGCCCTGTTAGATGATTACCATGATCAACTGGGCTTGTACCAGTTCATGTGGTCAAGTGGTATGATTTCAGATGAAACATACAAGCTCTTGAACCTGCTATGTGATTCTCAGTCATTCATACACCCATCACATTCATGTGAAAAAATTACTGAAATTGCTAATAAAGAACTTGGGAATATAGATCCATACAGTATCTTTACTCCTGCTTGCCATGCTAATGCTAGCCAGTCAAATCAGACAGTGAAAAGAAAGCATAGATTTGGCAGACTCGGTGCTGGGTATGATCCTTGCACAGAGAAGCACTCCACTATATACTTCAATCTACCTGAGGTCCAAAGGATTCTTCATGTGGATCCAAATCATAAGCCTGCTAAATGGGAGACCTGCAGTGAAGTGATAAATACCCACTGGAAGGATTCTCCAAGAACCGTGCTCAATGTTTTTCAAGAACTTATTCATTCGGGACTGCGGATATGGGTTTTCAGTGGTAATACTGATGCAGTAATCCCAGTAACATCTACTCGCTATAGCATAGATGCTCTCAAGCTTCCAACTGTGAGCCCCTGGCGTCCATGGTATGATGATGAGGAGGTAGGAGGATGGACACAAGAATATGCTGGACTAACGTTTGTAACTGTAAGGGGTGCAGGCCACGAAGTTCCTCTGCACAGACCAAAACTTGCTCTGACATTGTTCAAATCCTTCTTAGCAGGAACCTCCATGCCCAAGCTCGAGCAACTGAGCACCTCGTGA 1416 0.4371 MAQSERSQILAIAIVATLFLCINFATSSDPFVQQHHDKVGRLPGQNFNTSFAHYSGYITVNDKAGRALFYWFMEADQDPQSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYAWNQVANILFVDAPAGVGFSYSNTSSDLLNHGDRKTAEDSLIFLLKWFERFPQYKGRDFFITGESYAGHYVPQLSQVIVKHNTACKENAINLKGYMVGNALLDDYHDQLGLYQFMWSSGMISDETYKLLNLLCDSQSFIHPSHSCEKITEIANKELGNIDPYSIFTPACHANASQSNQTVKRKHRFGRLGAGYDPCTEKHSTIYFNLPEVQRILHVDPNHKPAKWETCSEVINTHWKDSPRTVLNVFQELIHSGLRIWVFSGNTDAVIPVTSTRYSIDALKLPTVSPWRPWYDDEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLFKSFLAGTSMPKLEQLSTS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1769 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Lja6g1769 471 Gene3D - 365 459 - -
Lja6g1769 471 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 29 10 465 - -
Lja6g1769 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 465 IPR001563 GO:0004185|GO:0006508
Lja6g1769 471 Pfam Serine carboxypeptidase 43 458 IPR001563 GO:0004185|GO:0006508
Lja6g1769 471 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Lja6g1769 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Lja6g1769 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Lja6g1769 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Lja6g1769 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Lja6g1769 471 SUPERFAMILY alpha/beta-Hydrolases 40 462 IPR029058 -
Lja6g1769 471 Gene3D - 318 356 - -
Lja6g1769 471 Gene3D alpha/beta hydrolase 34 293 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1769 Lja-Chr6 44905436 44909559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1769 345 462 Calmodulin-binding Proteins AT2G22960 26.891 2.04e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1769 K16297 - zju:107426294 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1769 6 44905436 44909559 Lja6g1769 6 44905436 44909559 ECH