Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1760 ATGGGGAAACTCTCACAGCACCAAACCCAGAAAAACAATGCAACTAAGGATAATAGTACTCTTAATGCCACAAACACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGATTCTCCAATTCAAAGAAGCTCAATATACAGAGGAGTCACTAGACACAGATGGACTGGCCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAATCTCAGAACAAGAAAGGACGACAAGGTGCTTATGATGATGAAGAGGCGGCAGCACATGCTTATGATCTTGCAGCATTGAAATATTGGGGTCCAGATACCATTCTCAACTTTTCATTATCGACCTACCAGAATGAATTGAATGAAATGGATGGTCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGTGTCTCTAAATACAGGGGCGTTGCAAGACACCATCATAATGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAGTACCTTTACCTCGGAACTTATGCTACACAAGAAGAAGCTGCAACAGCATATGATATGGCAGCAATTGAATATCGTGGACTCAATGCTGTTACCAATTTTGACCTAAGCCGTTACATTAAGTGGCTTAAGCCTAATCAAAGCAACACTGATAATAACACCAAAGTTACCACCTCTGATCAAGATCTTGTTGACTCTAACCCTATTAGCAACACCAATAATTTCATCCCAGATAACCCTCATGATAAAAAACAATCAGGACTTAATAACTTCTTCCAAAGTCAAGAGTCATTTAATAGCAGTAATGGAGAAGAAGAAACAATTACAATGGTCCAGCCTAGGCCAGCTGCTGCCACATCAGCCCTAGGGCTTTTGCTTCAATCATCTAAGTTTAAGGAGATGATGGAGATGACTTCTGCTGCTGATTTGTCAACGCCAGCTGAGTATGATATTCAGTTGGCGCCCTGTGCGTTCCCCGATGACATTCAAACATACTTTGAGTGTGAAGATTCTAGTAAATATGGAGAAGGGGATGATGATATGAATATGATCATGTTCAGTGACCTCAACTCTTTTGTTCCACCTATTTTCCATTGTGATGACTTTGAAGGCTTGAAGGTTTAA 1128 0.4149 MGKLSQHQTQKNNATKDNSTLNATNTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPDTILNFSLSTYQNELNEMDGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNQSNTDNNTKVTTSDQDLVDSNPISNTNNFIPDNPHDKKQSGLNNFFQSQESFNSSNGEEETITMVQPRPAAATSALGLLLQSSKFKEMMEMTSAADLSTPAEYDIQLAPCAFPDDIQTYFECEDSSKYGEGDDDMNMIMFSDLNSFVPPIFHCDDFEGLKV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1760 375 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 353 - -
Lja6g1760 375 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677
Lja6g1760 375 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 353 - -
Lja6g1760 375 SMART rav1_2 46 115 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 Pfam AP2 domain 144 195 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 Pfam AP2 domain 46 101 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 CDD AP2 144 205 IPR001471 GO:0003700|GO:0006355
Lja6g1760 375 SUPERFAMILY DNA-binding domain 45 111 IPR016177 GO:0003677
Lja6g1760 375 MobiDBLite consensus disorder prediction 1 39 - -
Lja6g1760 375 MobiDBLite consensus disorder prediction 215 235 - -
Lja6g1760 375 Gene3D AP2/ERF domain 46 111 IPR036955 GO:0003700|GO:0006355
Lja6g1760 375 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Lja6g1760 375 MobiDBLite consensus disorder prediction 1 29 - -
Lja6g1760 375 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1760 Lja-Chr6 44777514 44779743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1760 42 207 AP2-EREBP Transcription Factor Family AT5G57390 71.598 2.04e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja6g1760 AP2 1.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1760 K09285 - gmx:100804555 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1760 6 44777514 44779743 Lja6g1760 6 44777514 44779743 ECH