Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1758 ATGCCCCTTCCCGCAGCCACCATCCCCAAACCCACCACCATGCCAGACTTGGCCAACCTCTCTCTCCCCCTCACTCACTGCTCCACCGTCAATCCCCCCGACGCCACCGCCGCTGATTCCCCCGTCAAACCCCTACCCAACGACTACCCTTCCGACGACAACGACGCCGCTGAAGCTCGCGTCCTCAAGCGCAGCCGCGGCTCCGTCGAACGGGTCAAGAAGGCTTCCAATGACTCAAACTTCATGGATCACCTCAAAGATCCTTTCTCCCTTCCCTTCCTCTTTGGTGCTCCCAAAATGGTTGAATGTCATTTCTGTCACCATTGTATCTGCCCTGGGGAGGAGGTGTTATGCTCTGTTCGTGGATGTGGCGCACGCTACCACATGGATTGTGCTAAAGAAGCTGGTGGGGCTTCAAATGTGAAAAAATTCAAGTGCCCACAACATGTGTGTTTCGTTTGCAAACAAAGATTGCACTTGCGGTGTGTCCGTTGCCCAATGGCTTTCCATACTAAATGCGCACCATGGCCGGATGCAGTAATTGATCTGAAAGATCATCCGGGTCAAGCTGTTTGTTGGAGACATCCTTCTGATTGGCGCCTGGATAGAAAGCCTGAAACTTCGACAAGTGACATTTCGGAAGCATTTTGTCGCTTGCCCCTTCCTTTTACCGAAGAGGAGTTCAAGATTGACTTCAATTGGAAAGATACGGACACTAAGATGGAGCCACCACCATATGCACACATAAGACGAAATATATATCTAGTGAAGAAGAAGCGTAGTGTTGTAGATGATGAAGATGCAGGATGCACCAGTTGCAGTTCTACATGTTCTGAAGACTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGCTGCTCAGAAAATTGCAGTAATCGGCCATTTCGCAAGGAGAAAAAAATGGAGATTGTCAAGACTTTACTTTGTGGATGGGGAGTAGAAGCCGCTGAAGCAATTGAAAAAGGCGAATTTATAATTGAATATATTGGAGAAGTCATTGATGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAAGACCAGGGCGTACAAAATTTCTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAACACATCACGGTTTTTAAACCATAGCTGCAATCCAAACTGTGTTTTGGAAAAGTGGCAAGTTGATGGTGAAACCCGTGTGGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGAGAGCCATTAACGTATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGTCACTGTGGTGCCCCAAATTGTCAAGGCTTTCTAGGTACCAAAAAGAAGATTAGCAAGGTACACATCCGTTGGGGCTCCAAACGTAAGAGAACTTCAAAATCTCGCAAGTGTAGGCAAATTGAAAAGCCAACAACTATAAATGGCCATTTGGGGAGTGTCTGA 1470 0.466 MPLPAATIPKPTTMPDLANLSLPLTHCSTVNPPDATAADSPVKPLPNDYPSDDNDAAEARVLKRSRGSVERVKKASNDSNFMDHLKDPFSLPFLFGAPKMVECHFCHHCICPGEEVLCSVRGCGARYHMDCAKEAGGASNVKKFKCPQHVCFVCKQRLHLRCVRCPMAFHTKCAPWPDAVIDLKDHPGQAVCWRHPSDWRLDRKPETSTSDISEAFCRLPLPFTEEEFKIDFNWKDTDTKMEPPPYAHIRRNIYLVKKKRSVVDDEDAGCTSCSSTCSEDCVCRVQCISCSKACRCSENCSNRPFRKEKKMEIVKTLLCGWGVEAAEAIEKGEFIIEYIGEVIDDALCEKRLWDMKDQGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCNPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAPNCQGFLGTKKKISKVHIRWGSKRKRTSKSRKCRQIEKPTTINGHLGSV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1758 489 SMART PHD_3 151 196 IPR001965 -
Lja6g1758 489 SMART PHD_3 102 150 IPR001965 -
Lja6g1758 489 Gene3D SET domain 223 471 IPR046341 -
Lja6g1758 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 198 IPR013083 -
Lja6g1758 489 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 71 473 - -
Lja6g1758 489 SUPERFAMILY SET domain 218 438 IPR046341 -
Lja6g1758 489 SMART PostSET_3 432 448 IPR003616 -
Lja6g1758 489 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 14 479 IPR025787 -
Lja6g1758 489 Pfam SET domain 320 425 IPR001214 GO:0005515
Lja6g1758 489 PANTHER SET DOMAIN PROTEINS 71 473 - -
Lja6g1758 489 ProSiteProfiles Post-SET domain profile. 432 448 IPR003616 -
Lja6g1758 489 SMART set_7 309 432 IPR001214 GO:0005515
Lja6g1758 489 MobiDBLite consensus disorder prediction 33 54 - -
Lja6g1758 489 ProSiteProfiles SET domain profile. 309 426 IPR001214 GO:0005515
Lja6g1758 489 CDD SET_ASHR3-like 310 448 - -
Lja6g1758 489 ProSiteProfiles AWS domain profile. 266 309 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1758 Lja-Chr6 44764678 44769242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1758 290 447 C2H2 Transcription Factor Family AT2G23740 36.667 4.17e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja6g1758 SET 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1758 - - aprc:113859744 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1758 6 44764678 44769242 Lja6g1758 6 44764678 44769242 ECH