Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1750 ATGTTGATAACGGTCAGACAAGCTTCATCTTCTCCCCTCTGTCTCTTCCTTGATCGCCTCACCGTCTCAAAACCCTCCTCTAAATCATTCAAAACTTCCATTTGCCAAGCTCACAGAACACCCTCACCCTCCCATTCATGGAGTTCTGGGAATCTCTCTACCAGCTATGAGGCTGCAAATTTTGATCCCTTGGGTATCAACCCAGATTTATCTTCTGGACTGAGTTCTACATGGAAAGATCTTGTGTGCTTGTTTTCGCAACCATTTGAGAGCACTTCAAGTACAGAAAAGGGGAAACCTAACTCGTCGCGAGGAGTAGCAGCTGCAATTGAGGACAGTTCAATTGATTTTGGCGACTTCTTCAAAGGTCCACTGCCAGGGAAGTTTCTGAAGCTTTTGGGGTTTCTTGTCTTGTCACGGCTTGGTGTGTACATACCTCTAGGTGGGGTTAATAGGGAGGCTTTTATTGGGAATTTGGATCAGAACAGTTTGTTAAGCACTCTGGACTCATTTTCTGGTGGAGGTATTGGTAGACTTGGGCTGTGTTCCCTCGGTATTGTTCCCTTCATCAATGCGCAAATTGTTTTCCAGCTTCTTGCACAAGTATACCCCAAGTTGCAAGATCTTCAGAAACGAGAGGGTGAGGCTGGAAGAAAGAAAATTCTTCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTACAGGCGATTGGCCAAGTTCTTTTCCTACGCCCCTATGTCAATGACTTCTCAACAGAGTGGGTTATTTCCTCTGTTATCTTATTGACACTTGGTTCTGCGTTTACAACGTACATCGGCGAACGAATTACTGACCTAAAACTTGGGAATGGCACATCTCTTTTGATTTTCACAAACATTATCTCCTACTTGCCAGCTTCCTTTGGTCGAACATTCTCAGAAGCATTTAATGATGCTAACTATGTTGGACTTGCTACCATCATTGTGTCCTTCTTTTTGTTGGTAGTTGGTATTGTCTATGTTCAGGAAGCGGAGAGAAAAATACCTCTTAATTATGCTTCTAGACTCACCAGAAGCAGTGGACTTGAAAAATCTGCTTACCTACCCTTTAAGGTAAATAGTTCAGGAGTGATGCCCATCATATTTTCTACTTCATCGTTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTTTAAGTCCACTAAAGAGTGCGGCAATGGCTTTGAATCCTGGAGGTTCCTTCTATCTTCCATTTAACATATTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAGCAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCGATCTTGGCTGCTGGTCCAGCAGTAGTTGAGCAAACCACACACTTGACTGCATTCCGGGGGTTTGCTGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACAGCAAGGAAAGTTCAGGCTGAGATTATATCCCAAAAGTACAAGAACATTGAGTTCTATGACTTTGATAAAAAGTATTGA 1611 0.4264 MLITVRQASSSPLCLFLDRLTVSKPSSKSFKTSICQAHRTPSPSHSWSSGNLSTSYEAANFDPLGINPDLSSGLSSTWKDLVCLFSQPFESTSSTEKGKPNSSRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLVLSRLGVYIPLGGVNREAFIGNLDQNSLLSTLDSFSGGGIGRLGLCSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWVISSVILLTLGSAFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTFSEAFNDANYVGLATIIVSFFLLVVGIVYVQEAERKIPLNYASRLTRSSGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSPLKSAAMALNPGGSFYLPFNIFLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQTTHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKKY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 408 430 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 497 515 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 221 244 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 279 302 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 179 199 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 369 388 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 463 481 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 129 147 - -
Lja6g1750 536 PRINTS Preprotein translocase SecY subunit signature 253 278 - -
Lja6g1750 536 ProSitePatterns Protein secY signature 1. 180 199 IPR030659 -
Lja6g1750 536 Pfam SecY 181 511 IPR002208 GO:0015031|GO:0016020
Lja6g1750 536 Gene3D SecY subunit domain 120 524 IPR023201 -
Lja6g1750 536 Hamap Protein translocase subunit SecY [secY]. 117 528 IPR026593 -
Lja6g1750 536 ProSitePatterns Protein secY signature 2. 272 289 IPR030659 -
Lja6g1750 536 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 47 533 - -
Lja6g1750 536 SUPERFAMILY Preprotein translocase SecY subunit 121 518 IPR023201 -
Lja6g1750 536 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 47 533 IPR002208 GO:0015031|GO:0016020
Lja6g1750 536 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 128 524 IPR002208 GO:0015031|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1750 29 534 Chloroplast and Mitochondria Gene Families AT2G18710 81.729 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1750 K10956 - gmx:100810430 881.322