Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1745 ATGAACAAAAAGCCTCTCACGTTTCTTGCCACAACCATTTCGGCCAAGTTCAACGTTCCTCCTCGATTCTACTGTTCTCCAACCTCGCCTCCCTCTTCTCCTTCGTCCAACAAGCTCTTTGTCGGAGGGCTGTCATGGTCAGTTGACGAGAAGTCCCTCCAAGACGCTTTCTCTTCGTTCGGACAAGTCACTGAAGTGAGGATCGTGTATGATAAAGACAGTGGAAGGTCTAGAGGCTTTGGATTTGTCATCTTTTCAGCTGAAGATGATGCCAAATCTGCAAAGGATTCAATGAATGGAAAGGCATTGTTAGGTAGACCATTGAGGATTAGTTTTGCTCTCGAGAAGGCCCGTGGTGTACCTATTGTAGTTCCCAGATTTTCAAATATTGGAAATTTAAACAAGCACTAG 411 0.4501 MNKKPLTFLATTISAKFNVPPRFYCSPTSPPSSPSSNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALEKARGVPIVVPRFSNIGNLNKH* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1745 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Lja6g1745 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Lja6g1745 136 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 21 134 - -
Lja6g1745 136 SUPERFAMILY RNA-binding domain, RBD 26 119 IPR035979 GO:0003676
Lja6g1745 136 SMART rrm1_1 38 111 IPR000504 GO:0003723
Lja6g1745 136 Gene3D - 22 119 IPR012677 -
Lja6g1745 136 PANTHER TRANSFORMER-2-RELATED 21 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1745 Lja-Chr6 44610083 44611829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1745 17 130 Eukaryotic Initiation Factors Gene Family AT1G22760 33.051 7.05e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1745 - - gmx:100810104 200.675