Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1740 ATGAAGAGGCTAAATAACTCAGATACCATGGCTACTTTGGTTTCCAAGTTCCCATCAAAAGGGGTGAAACAGAGGAATGAAACTCAAGGTTACAGTGAAGAATTTCAGGCAATGCTAGATAGATTGGACCAAGAAGACAGTTATGAAGATGTTAGCTTGGTCTTGGAGAAGAAAAGGAGACTCAGATTTGATCAGGTTAAAGCCTTAGAGAGGAGCTTTGAATTGGACAACAAGCTTGAGCCAGAGTACAAGGTGAAGCTAGCAGAAGAACTTGGATTGCAACCAAAACAGGTTGCTATATGGTTCCAGAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGCATTCTGAAGTCCAACTTTGATCATCTCAAGGTTGAGTATAGTAATCTTAAGCAAGAGAATGAGGCTCTTACTATGAAGGTGAGAGAGTTGAAGGCAAAGTTGATTAGAGTTGAAAGCAATGAGTCAGAGAAAGATGAATCTCCCAATTCAGAGGTTAGAGACAGAGGAGCTTCAGAGAGCAATTCATGTGGTATGCTTAAGGAGGAAAGCAATGTTGAATCTCCTTTGTGTTTCAATGGATCTTTTCCAAGTTCAAGTCCAGTGAAAAATTGGCTTCATCAATCTGATTCAAAGGGGTCTCCTGATAGAACATTTCAGAATCACTTAATGAGAATGGAGGAGCAGAGTTTCTATAGCATCAATGAATTCTATAGTTTCTTTTCAGTTGATCAATGCCCTACTCTGTAG 765 0.4 MKRLNNSDTMATLVSKFPSKGVKQRNETQGYSEEFQAMLDRLDQEDSYEDVSLVLEKKRRLRFDQVKALERSFELDNKLEPEYKVKLAEELGLQPKQVAIWFQNRRARWKTKQLERDYGILKSNFDHLKVEYSNLKQENEALTMKVRELKAKLIRVESNESEKDESPNSEVRDRGASESNSCGMLKEESNVESPLCFNGSFPSSSPVKNWLHQSDSKGSPDRTFQNHLMRMEEQSFYSINEFYSFFSVDQCPTL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1740 254 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Lja6g1740 254 Gene3D - 55 119 - -
Lja6g1740 254 Coils Coil 125 159 - -
Lja6g1740 254 SMART HOX_1 58 116 IPR001356 GO:0003677
Lja6g1740 254 MobiDBLite consensus disorder prediction 157 184 - -
Lja6g1740 254 SUPERFAMILY Homeodomain-like 56 114 IPR009057 -
Lja6g1740 254 MobiDBLite consensus disorder prediction 157 172 - -
Lja6g1740 254 Pfam Homeodomain 58 110 IPR001356 GO:0003677
Lja6g1740 254 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Lja6g1740 254 CDD homeodomain 57 113 IPR001356 GO:0003677
Lja6g1740 254 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 241 IPR045224 GO:0003700
Lja6g1740 254 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 5 241 - -
Lja6g1740 254 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Lja6g1740 254 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Lja6g1740 254 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1740 Lja-Chr6 44571036 44572748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1740 1 163 Homeobox Transcription Factor Family AT4G40060 48.000 1.59e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja6g1740 Homeodomain 8.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1740 K09338 - qsu:111985016 261.151