LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g1732	ATGTCTTCCTCATTCACTCTTAGACTCTTTTCAACTCTTCTCTTCTGCATACTTGCCTTCCTCTTCTTTTCACCTACTGAAACAACATCAACTTTCAGCCATTACAACTGCACAAGCAAGGACACGTTTAGTCCCAATAGCACTTACCAATTCAACTTAGACACACTCTTATTTGCACTTTTGTCCAAAGCTGCTGATATCACAAACCATGGCTTCTACAACACCACAATTGGTGGAACAAACACTTCGAACACTATTTATGGCCTCTTCATGTGTATTGGACACATAGAACACTGTGGAGAATGTGTGAGTAACTCCATCAAGACACTTGCTTCAATGTGTGCCTTCAATAAAGAAGCTATAATTTGGTCTGATCAATGCTTGGTTCGGTATTCGAACCGGTCTTTCTTCAACACTATGGAGGAATGGCCATCATTCTGTGTGGAGAACATGAAGGATAATCAAGGCCTGTTGAGTAGCTTTAACAAAGTGCTAAGTTCCCTGATGGAGGATCTTTTAACTCAAGTTGGTGAAGCTTCAATTGGTTCTGAAAAATTTGTTGTTAACAAAACAATTTTCTCTGAGGACAAATTCTTGTTTGGTCTTGCTCAATGCATCCCAAGCCTTTCCAAGGATAAGTGCAAGAAGTGCCTAAGGGATGCCATGGCTTATCTTAAAACCACATGTGCAAGAGGCAAGATAGGAGGAAGTGTTCTGTATCCAAGTTGTATTGTTAGATATGATTCTTATTCATTTTTCCCACTACCTAAAGGGGGGAAAAGGGGGCATAGAGCACTAGCATATGTCATAATATTTCATGGACTTATTCCAGTTACGATTCTCTGTTTTGGGTGCTACTATCTGCTACATAGGAAAGCAAGGAAGATTTTCAAGTGTCAAAAAGAAAATTTTGGGGAAGAGATTACACCAGAAATGAACTCTTTGCAATTTGATTTGGCCACAATTCAAGTAGCTACAAACAAGTTCTCTGAAGATAACAAGATAGGGGAAGGTGGTTTTGGAGAAGTTTACAAGGGTATGTTTCCTAATGGACATGAAATTGCAGTAAAGAGGCTCATAAGGAAGTCCAGTCAAGGAGCTATAGAATTCAAGAATGAGGCTTTGTTAATAGCCAAGCTTCAACACAGAAATCTTGTGAGAATGTTAGGATTTTGCATGGAAAGGAATGAGAAGATACTCATTTATGAGTTTATGCACAACAAAAGCCTTGATTACTACCTATTCAGCCCTGGATACCATAGAAGACTTACTTGGCCTGAACGTTACAAGATCATAAGAGGAATTGCGCGAGGTATTCTTTATCTGCATGAGGACTCTCATCTCAAAATCATACACTGCGATCTTAAACCCAGCAACATCTTGTTAGATGACAGAATGGTTGCAAAGATATCAGATTTTGGCTTGGCAAGGATTGTTGCCATAGATCAAATGCAAGGAAATACTAGTATAATTGCTGGGACATATGGTTACATGTCTCCTGAATATGCAATGCTAGGCCAATTTTCAGTAAAATCTGATGTATTCAGCTTTGGAGTCATAGTTCTAGAGATTGTTAGTGGAAAAAGAAATGTTAACTTTAATGGGGTAGATTCCATTGATGACCTCTTGAGCCATGCTTGGAAGAAGTGGTGGGATAATAAGCCATTGGAATTGTTGGATCACACATTAGCACACTCATTTTCAGAAAAAGAAGTGAATAGATGCATACAAATTGGTCTACTGTGTGTACAAGAAAACCCGGATCAAAGGCCTACAATGGCAACAATTGCTTTGTATTTCAACTGTGATTCAATGGATCTGCCATTACCTCAAGAGCCAGCATTTTTCATGCGTGGAAGAACAGAACCAAAGATGGCTATTAAGGAATCAGAGTCAAGACTACCTAGAAAATTGTCCTATTAA	1923	0.389	MSSSFTLRLFSTLLFCILAFLFFSPTETTSTFSHYNCTSKDTFSPNSTYQFNLDTLLFALLSKAADITNHGFYNTTIGGTNTSNTIYGLFMCIGHIEHCGECVSNSIKTLASMCAFNKEAIIWSDQCLVRYSNRSFFNTMEEWPSFCVENMKDNQGLLSSFNKVLSSLMEDLLTQVGEASIGSEKFVVNKTIFSEDKFLFGLAQCIPSLSKDKCKKCLRDAMAYLKTTCARGKIGGSVLYPSCIVRYDSYSFFPLPKGGKRGHRALAYVIIFHGLIPVTILCFGCYYLLHRKARKIFKCQKENFGEEITPEMNSLQFDLATIQVATNKFSEDNKIGEGGFGEVYKGMFPNGHEIAVKRLIRKSSQGAIEFKNEALLIAKLQHRNLVRMLGFCMERNEKILIYEFMHNKSLDYYLFSPGYHRRLTWPERYKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDDRMVAKISDFGLARIVAIDQMQGNTSIIAGTYGYMSPEYAMLGQFSVKSDVFSFGVIVLEIVSGKRNVNFNGVDSIDDLLSHAWKKWWDNKPLELLDHTLAHSFSEKEVNRCIQIGLLCVQENPDQRPTMATIALYFNCDSMDLPLPQEPAFFMRGRTEPKMAIKESESRLPRKLSY*	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g1732	640	SMART	serkin_6	329	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja6g1732	640	CDD	STKc_IRAK	335	597	-	-
	Lja6g1732	640	Gene3D	Transferase(Phosphotransferase) domain 1	405	605	-	-
	Lja6g1732	640	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	30	257	-	-
	Lja6g1732	640	ProSitePatterns	Protein kinases ATP-binding region signature.	335	362	IPR017441	GO:0005524
	Lja6g1732	640	ProSiteProfiles	Gnk2-homologous domain profile.	142	252	IPR002902	-
	Lja6g1732	640	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	268	622	-	-
	Lja6g1732	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Lja6g1732	640	Pfam	Protein tyrosine and serine/threonine kinase	332	597	IPR001245	GO:0004672\|GO:0006468
	Lja6g1732	640	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	30	257	-	-
	Lja6g1732	640	SUPERFAMILY	Protein kinase-like (PK-like)	313	620	IPR011009	-
	Lja6g1732	640	Gene3D	Phosphorylase Kinase; domain 1	291	404	-	-
	Lja6g1732	640	Gene3D	-	29	136	IPR038408	-
	Lja6g1732	640	Gene3D	-	146	252	IPR038408	-
	Lja6g1732	640	ProSiteProfiles	Protein kinase domain profile.	329	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja6g1732	640	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	268	622	-	-
	Lja6g1732	640	ProSiteProfiles	Gnk2-homologous domain profile.	31	136	IPR002902	-
	Lja6g1732	640	Pfam	Salt stress response/antifungal	153	250	IPR002902	-
	Lja6g1732	640	Pfam	Salt stress response/antifungal	37	133	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g1732	Lja-Chr6	44476494	44479512	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g1732	1	618	Receptor kinase-like Gene Family	AT4G05200	43.914	1.07e-179	524

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja6g1732		PK_Tyr_Ser-Thr	3.1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g1732	-		-	lja:Lj6g3v1055620.2	989.178