LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g1726	ATGGAGGATAACCGCCAAATCATCAATTTTGCTCCTTCTTCTTCATCTTCAGTGATGCCTCGAAAAAAATATGATGTTTTTCTTAGCTTTCGCGGTGATGATACTCGTGACAACTTCATCAGCCATCTTTATGATGCTCTAAAAAAGGAAGTGGAGACCTACATAGATTACAGGCTTGAGAAGGGAGATGAGATCTCACAAGCACTCTTCAATGCCATACAAGACTCGCATGTGTCTGTTGTCATCTTCTCTGAAAACTATGCTTCCTCCAAGTGGTGCTTGGATGAGCTCACTAAGATTCTTCAATGCAAGAGGGATCATGGACAAATTGTAATACCTGTGTTCTATAAAGTAGATCCTTCACATGTGAGGAAGCAGACAGAGACCTACAGGAAAGCTTTTGCAAAGCATGAGCAAGATCTCAACATTAGTGATGATGACAAGTTGCAGAAATGGAGACTTGCCCTCAGAGATGCAGCCAACTTGGCAGGGTGGGACTCTCGGAATAGGAATGAATCTGATTTCATTAAGGACATTGTTAAAGATGTTTTACAAAAACTGAATATCAGATACCCAGTGGAATTGAAGGGATTAGTTGGAATAGAAGAACACTATGCAACTGTTGAGTCATTATTGAAAATTGGCTCAATAGATGAGGTTCGAGTGATTGGCATATGGGGCATGGGTGGCATAGGGAAGACCACATTGGCGCATGCTTTGTATGCCAAGTTGTCTATTGAATTTGAAGGTCATTGCTTTCTCAAAAATGTAAGGGAACAATCAAAAAAGATTGGTTTAGATGCTTTGCGCAGCACACTTTTTTCTGAGTTGTTAAGAGAAAAGATCCTTCAAGTTGAGTCCCATTATGTAATGAGAAGGCTTGCACGTAAGAAAGTTCTTATTGTTTTTGATGATGTGGCTACCTCAGAACAGTTAGATGATCTTATAAGTGATTATGATAGTTTGGCACCCGGAAGTAGAGTGATTGTAACAACTAGAGACAAACACATATTTAGCCAGGTGAATGAAATATATGAGGTCAAGGAATTAAATAACCATGACTCTCTTCAACTTTTTTGCTTGAATGCCTTCAGAGAAAAACAACCCAAAATTGGATATGAAGAGCTATTAGAAAGTGTGATTGCATATTGCAAAGGCAACCCTTTGGCCTTAAAAGTCTTAGGTGCACGACTTCGATCAAGAAGCAAAGAAGCATGGCAAAGTGAAGTTAGAAAGCTGCAAAAGATTCCAGATGTGAAAATTCATAATGTGTTGAAATTGAGTTTCGATGGCTTGGATTGTACAGAGCAAGACATATTTCTAGACATTGCGTGCTTCTTAAAAGGAAATCATAGAGATGGTGTAACAAGTTTACTAGATGCTTGTGGTTTCTTCGCTACTGCTGGGATAGAAAACCTCTTAGATAAGTCTCTTATAACTATTTCAGAAGATAATGTAATACAAATGCATGACTTGATACAAGAAATGGGTTGGGAAATTGTCCGTCAAGATAGCAAAGACCCAGGAAGAAGAAGTCGATTGTGGAATCCTGACGAAGTGTATGATGTATTGAAAAACAATAAGGGAACTGAAGCAGTGGAAGGCATAGTTTTAGATGTGTTTGAAATTAAGGATCTACCTTTGAGCTCTAATTCTTTTATAAAAATGAGTGAAATGAGAATTCTTAAATTCTATTCTAGTAGGTGGAGTCAAGAATGTAAGATATACCTTCCTAATGGTCTTGACGCTCTGTCTGACAAATTGAGGCTCCTTGAATGGCCTGGATACTGTTTGGAGTCTTTGCCATCAACCTTTTGTGCTGAAAAACTTGTTAAGCTTGTCATGCGACGCAGCAACCTTAAAAAGCTTTGGAATGGAGTTCTGGAAATTGACCTTACATGCTCCAAAGACCTGGTTGAGCTCCCAGACTTAACTCATGCTACAAATCTTGAAGTATTACGTCTTGAGGAGTGTATAAGTTTGCGTGAAGTTCATCCATCCATTTTATCTCTCCCCAAGCTTGAGAGTTTGAATTTACAAGGCTGCACAAAGATTGAATGCCTTGAAACTGAGGTCCATTCAAAATCTCTTCGCATAATCCACCTCCATAACTGCTCATCCCTGAAGAAATTCTCAGTCTTCTCTAAGAAATTGGAGGAATTGTGGTTAGATTGTACAGTCATCCAAGAACTACCCTCGTCAATTTGGCGTTGTGAGAAACTTGAGAGTTTGTGGCTAATGGGATGTGACAATCTTGAGAGTTTTGGGATAGAGAGCAAGTCATCTCATGATCCGGTAAATGCATCTCTTCAAATTCTAGATCTTTCTGGGTGCAAATTAGTGAATGAATCCAATCTATGTTTAATCCTTGATGGTGTGCGGTCTTTATCTGACTTGTATTTGGAAGATTGTTGCAACTTACGAGCACTCCCTGACTCCATTGGCTCGTTAACATCATTAGTGGAGTTACACCTAAGTGGGAACAATAATGTTGAGATGTTGTCTCCAAACATCAAGAACCTTTTGAAGTTGAAAAGTCTTTATTTAGTCAATTGCAGGAAACTTGTGTCTCTGCCAGACCTTCCACCTTCCCTGAAAAGGTTAAGTGCCGTTAACTGCACATCTCTGGAGACCAAGTTCAGTACTCAATTGTTGTCGGTGGTAAATACAGATGATCGTGGTGGATATGTTATGGTCCCTGGATCCCAAGTTCCTGACATGTTTATGTTTCGCGGTGAAGGGGATTCAATAACTTTTCCGCAACTTCCAAATTCTAGAAACATATGCCGCTTTACTTGTTGCATCATTCTTCCTTATCTACCGCAGAGCCGTGGAACTCTGCGATATCGGATCAACAAACATCCCACATTATACGATGATGGGTTTCTTTTGTTTTGTCCTTACGGTGACACTTCCATTTCGGATCATCTGGTTCTTTTCTCAATCCCAATTGACAGATTTGATTCTTTAGAGTGTGATCCTAACAACATAACATTTGAATTCGGGCATCTATATTCAAATGATACGATTGAAATAAAGAGGTGTGGGGTCATTCCAGTATATGCTTCTCAATATCAACAACAACTGACTATTCCAATAGGTACGCACTGTATCAAACTTCAACTGTATTCCCTCTTAATATGCAATCTCTTTTTTTTTTTTAAGTTCAATTTATTATCTTTTTTTTTTAAGGTTTACTGTAGATGTAAAAAAATAGATGGAAAATTTTAG	3231	0.3869	MEDNRQIINFAPSSSSSVMPRKKYDVFLSFRGDDTRDNFISHLYDALKKEVETYIDYRLEKGDEISQALFNAIQDSHVSVVIFSENYASSKWCLDELTKILQCKRDHGQIVIPVFYKVDPSHVRKQTETYRKAFAKHEQDLNISDDDKLQKWRLALRDAANLAGWDSRNRNESDFIKDIVKDVLQKLNIRYPVELKGLVGIEEHYATVESLLKIGSIDEVRVIGIWGMGGIGKTTLAHALYAKLSIEFEGHCFLKNVREQSKKIGLDALRSTLFSELLREKILQVESHYVMRRLARKKVLIVFDDVATSEQLDDLISDYDSLAPGSRVIVTTRDKHIFSQVNEIYEVKELNNHDSLQLFCLNAFREKQPKIGYEELLESVIAYCKGNPLALKVLGARLRSRSKEAWQSEVRKLQKIPDVKIHNVLKLSFDGLDCTEQDIFLDIACFLKGNHRDGVTSLLDACGFFATAGIENLLDKSLITISEDNVIQMHDLIQEMGWEIVRQDSKDPGRRSRLWNPDEVYDVLKNNKGTEAVEGIVLDVFEIKDLPLSSNSFIKMSEMRILKFYSSRWSQECKIYLPNGLDALSDKLRLLEWPGYCLESLPSTFCAEKLVKLVMRRSNLKKLWNGVLEIDLTCSKDLVELPDLTHATNLEVLRLEECISLREVHPSILSLPKLESLNLQGCTKIECLETEVHSKSLRIIHLHNCSSLKKFSVFSKKLEELWLDCTVIQELPSSIWRCEKLESLWLMGCDNLESFGIESKSSHDPVNASLQILDLSGCKLVNESNLCLILDGVRSLSDLYLEDCCNLRALPDSIGSLTSLVELHLSGNNNVEMLSPNIKNLLKLKSLYLVNCRKLVSLPDLPPSLKRLSAVNCTSLETKFSTQLLSVVNTDDRGGYVMVPGSQVPDMFMFRGEGDSITFPQLPNSRNICRFTCCIILPYLPQSRGTLRYRINKHPTLYDDGFLLFCPYGDTSISDHLVLFSIPIDRFDSLECDPNNITFEFGHLYSNDTIEIKRCGVIPVYASQYQQQLTIPIGTHCIKLQLYSLLICNLFFFFKFNLLSFFFKVYCRCKKIDGKF*	1077

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g1726	1076	Gene3D	-	21	184	IPR035897	-
	Lja6g1726	1076	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	16	1007	-	-
	Lja6g1726	1076	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	443	IPR027417	-
	Lja6g1726	1076	Pfam	NB-ARC domain	218	415	IPR002182	GO:0043531
	Lja6g1726	1076	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	1007	IPR044974	GO:0006952
	Lja6g1726	1076	ProSiteProfiles	TIR domain profile.	22	187	IPR000157	GO:0007165
	Lja6g1726	1076	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	165	IPR035897	-
	Lja6g1726	1076	SMART	AAA_5	219	349	IPR003593	-
	Lja6g1726	1076	Gene3D	-	185	348	IPR027417	-
	Lja6g1726	1076	SMART	till_3	23	162	IPR000157	GO:0007165
	Lja6g1726	1076	Pfam	TIR domain	23	192	IPR000157	GO:0007165
	Lja6g1726	1076	PRINTS	Disease resistance protein signature	669	685	-	-
	Lja6g1726	1076	PRINTS	Disease resistance protein signature	222	237	-	-
	Lja6g1726	1076	PRINTS	Disease resistance protein signature	384	398	-	-
	Lja6g1726	1076	PRINTS	Disease resistance protein signature	293	307	-	-
	Lja6g1726	1076	Gene3D	-	349	433	IPR042197	-
	Lja6g1726	1076	Gene3D	Ribonuclease Inhibitor	715	889	IPR032675	-
	Lja6g1726	1076	Gene3D	Ribonuclease Inhibitor	516	714	IPR032675	-
	Lja6g1726	1076	SUPERFAMILY	L domain-like	488	876	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g1726	Lja-Chr6	44368850	44377137	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g1726	9	837	WRKY Transcription Factor Family	AT4G12020	34.149	4.61e-119	402

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g1726	-		-	lja:Lj6g3v1038830.1	1252.65