Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1721 ATGGATGTTCAAGTGATAAATGTGGAAGAAGGGAACGGTCATCAAGCTAAGGCTGATGATGGAGATGCAGAACCAAGTGACGGGGAAATTAATAATGCTGAAAACTCTGGATCTGGATCTCAGGTTGAGGATGGAATTTCTGAGCCGTTTGTGGGTATGGAATTTGATTCTGAAGTTGTTGCTAAGACTTTCTATGAAGAGTATGCTAGACGCATGGGTTTCTGCTCTAAGATTGGCCCATGTAATCGCTCTAGAACTGATGGGTCAAATATGTATCGGGAGTTTGTGTGTAACAGGGAAGGTTTGAAAAAAAGAAATAATGACAGTTGTGATGCCATGATTAGGATTGAGCTAAAGAGTCAAAATAAATGGGTTGTAACAAAATTTGTGAAGGAGCATAGTCATTCCGTGGTGAGCTCCAGTAAGGCACTCAACCTTCAGCCTCGTAAGCATTTTTCTAGTGTTGGTAGGACAATGCCTGAAACTTACCAAGGAGTGGGACTTGTTCCAAGTGGTGTTATGTATGTGTCTATGGATGGGAATCGCATTTCGAACCAGAATACTCGTGGGATGCTGAATACTCATGCTGCTGCCGCTGCTGAACCCAGTCACCCAATTAAAAATTCCACATCAATGAATTATACAGTTAGGCCACCTTTTCAAAACAGGACACTCGGGAGGGATGCTCATAATCTACTGGAGTATTTTAAGAAAATGCAGGCGGAGAACCCTGGTTTCTTCTATGCTATACAACTTGATGAAGAGAATCGTATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCTTATAGTCATTTTGGTGATGCAGTCCATCTGGACACAATGTACAGAGTAAATCAATACAGAGTGCCATTTGCTCCTTTTACTGGAATAAACCATCATGGCCAAATGGTCTTGTTTGGTTGTGCACTTCTCTTGGATGATTCCGAGGCATCTTTTTTGTGGCTCTTTAAGACATTTCTTACAGCAATGAATGATCGTCAACCTGTCTCTATAATTACTGGTCAAGACAAGGCCATTCAGGCAGCAGTTTCACAAGTTTTCCCTCAAGCTCGACACTGCATTAACAAGTGGGATGTCTTGAGAGAAGGCCAAGAAAAGTTGGGCCATGTATGTCTTGCGCATCCGAACTTTCAGGCTGAACTTTATAACTGTATTAACCTGACAGAAACCATTGAAGAGTTTGAGTCATCTTGGAATTCTATCCTTGATAAATATGACCTCAGGAGAAATGATTGGCTTCAGTCACTGTATACTGCTCGTGCGCAATGGGTTCCGTCATACTTCCGTGATTCATTTTTTGCTAGAGTATCTCCTAATCAAGGACTTGATGTATCTTTTTTTGATGGTTATGTCAACCAACAGACGACATTGCCATTGTTCTTTAGGCAGTATGAAAGAGCTTTGGAGAGCTGGATTGAAAAGGAGATAGAAGCAGATTTTGAGACGATTTGCACAACACCAGTTTTGAAGACACCTTCACCTATGGAGAAACAGGCTGCCAACCTTTATACAAGAAAAATATTTTCAAAATTTCAGGAGGAACTAGTTGAAACTTTTGTTTATACTGCAAATATAATTGAAGGAGATGGGGAAAATAGCACTTTCAGGGTTGCAAAATTTGAGGATGACCAAAAGTCATATAGTGTCACATTAAACCATTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATGTCTTAACTGTTTTCACCGTAACAAATGTACTTACATTACCATCCCATTACATCTTAAAACGTTGGACAAGAAATGCAAAAAGTAGTGCCGGATCAGATGAGCGTGCTGGGGAATCACATGAACAAGAGTCTCTGTCATCGAGGTATAATAGTTTATGTCGGGAAGCCATCAGATATGCTGAGGAAGGGGCAGTAACTGTGGAAACTTATAATGCTGCAATTAGTTGTCTTAGAGACAGTGGAAAGAAGGTTACTGCTATGAAAAGAAGTGTTGCCAAAGTTTCACCTAATAATCAGGTCAGTTGGGCTGCTTATGATGACAAGAAATCAACTTCGGATACAACTCCTCTGTTGTGGCCCCGGCAAGATGAAGTAACAAGAAGGTTTAATCTTAATGATGCTGGCGGTCCTGCTCAATCAGTTGCTGATCTAAATTTGCCACGAATGGCCCCGGTGTCCGTTCACCGAGATGATGGTCCATCTGGAAACACGGTGGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAAAAACGCAAGTCCAGAAAAAAGAGTAGCTGTTATAAATCTGAAGTTGCAAGATTATAGCAGAACTCCGTCAACTGAATCTGAGGTTAAATTTCAGCTTTCCAGAGTTTCTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGTGAACAGCTCTCAATACCAGCTAATAAGGTTGCTGTAATAAATCTCAAGCTTGAAGATACTGAGAGAACTTCTGGCGAGTCTGAAGTAAAGTTTCAGGTGTCAAGGGATACATTGGGTGCTATGCTGCGATCAATGGCCTACATTCGTGAGCAACTATCTTCTATGGCCTACATCCGTGAGCAACTATCTACTGCTGGCAATTCACAGTCAGAACCTCAATTGAAAAAGCAAAGGAAGTAA 2676 0.4118 MDVQVINVEEGNGHQAKADDGDAEPSDGEINNAENSGSGSQVEDGISEPFVGMEFDSEVVAKTFYEEYARRMGFCSKIGPCNRSRTDGSNMYREFVCNREGLKKRNNDSCDAMIRIELKSQNKWVVTKFVKEHSHSVVSSSKALNLQPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRISNQNTRGMLNTHAAAAAEPSHPIKNSTSMNYTVRPPFQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEENRMSNVFWADARSRTAYSHFGDAVHLDTMYRVNQYRVPFAPFTGINHHGQMVLFGCALLLDDSEASFLWLFKTFLTAMNDRQPVSIITGQDKAIQAAVSQVFPQARHCINKWDVLREGQEKLGHVCLAHPNFQAELYNCINLTETIEEFESSWNSILDKYDLRRNDWLQSLYTARAQWVPSYFRDSFFARVSPNQGLDVSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETICTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFVYTANIIEGDGENSTFRVAKFEDDQKSYSVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSSAGSDERAGESHEQESLSSRYNSLCREAIRYAEEGAVTVETYNAAISCLRDSGKKVTAMKRSVAKVSPNNQVSWAAYDDKKSTSDTTPLLWPRQDEVTRRFNLNDAGGPAQSVADLNLPRMAPVSVHRDDGPSGNTVVLPCLKSMTWVMENKNASPEKRVAVINLKLQDYSRTPSTESEVKFQLSRVSLEPMLKSMAYISEQLSIPANKVAVINLKLEDTERTSGESEVKFQVSRDTLGAMLRSMAYIREQLSSMAYIREQLSTAGNSQSEPQLKKQRK* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1721 891 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 804 IPR031052 GO:0006355
Lja6g1721 891 MobiDBLite consensus disorder prediction 29 43 - -
Lja6g1721 891 Pfam MULE transposase domain 279 369 IPR018289 -
Lja6g1721 891 ProSiteProfiles Zinc finger SWIM-type profile. 557 593 IPR007527 GO:0008270
Lja6g1721 891 Pfam SWIM zinc finger 559 591 IPR007527 GO:0008270
Lja6g1721 891 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 36 804 - -
Lja6g1721 891 MobiDBLite consensus disorder prediction 1 45 - -
Lja6g1721 891 Pfam FAR1 DNA-binding domain 63 138 IPR004330 -
Lja6g1721 891 SMART 26again6 568 595 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1721 Lja-Chr6 44334537 44341203 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g1721 MULE 1.8e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1721 - - gmx:100786516 1451.03